| |
stickleback chromosome size [bp]
|
16,198,764
|
18,115,788
|
14,603,141
|
16,282,716
|
20,240,660
|
19,732,071
|
11,717,487
|
| |
genetic linkage group sea bass
|
LG13
|
LG15
|
LG1?
|
LG17
|
LG6
|
LG16/18?
|
LG18?
|
|
B
|
sea bass BAC-contigs
|
20 (29)
|
24 (38)
|
30 (30)
|
35 (43)
|
38 (43)
|
22 (35)
|
9 (17)
|
| |
largest BAC-contig [bp]
|
3,426,120 (1,723,928)
|
6,616,511 (2,444,746)
|
3,516,936 (2,019,946)
|
1,934,982 (1,280,086)
|
2,450,075 (2,125,025)
|
7,220,725 (2,296,377)
|
4,139,228 (2,305,187)
|
| |
% of chr. covered by BAC-contigs
|
89.3% (82.5%)
|
88.4% (79.0%)
|
88.5% (78.7%)
|
83.6% (70.6%)
|
86.6% (78.2%)
|
90.3% (82.8%)
|
87.4% (83.3%)
|
| |
number of BACs in min. tiling path
|
156 (150)
|
182 (167)
|
163 (138)
|
170 (143)
|
206 (185)
|
194 (178)
|
111 (116)
|
| |
paired end aligned consistent BACs
|
969 (619)
|
916 (533)
|
784 (459)
|
783 (373)
|
1,004 (628)
|
1,077 (639)
|
639 (393)
|
| |
one end aligned BACs
|
1,017 (1,057)
|
1,163 (1,162)
|
1,110 (1,145)
|
989 (1,040)
|
1,204 (1,187)
|
1,178 (1,183)
|
693 (691)
|
|
C
|
inconsistently aligned same chr.
|
73 (96)
|
47 (74)
|
37 (34)
|
68 (78)
|
104 (128)
|
30 (46)
|
7 (10)
|
| |
potential intra-chr. rearrangements between stickleback and sea bass
|
10
|
8
|
6
|
12
|
14
|
8
|
2
|
| |
intra-chr. rearrangements also found between medaka and stickleback
|
9
|
4
|
4
|
6
|
8
|
6
|
2
|
| |
BAC-contigs with same neighbour in medaka as in stickleback
|
3
|
7
|
4
|
9
|
7
|
3
|
4
|
|
D
|
total annotated genes in ensembl
|
779
|
799
|
698
|
761
|
1,037
|
927
|
460
|
| |
% genes covered by BAC-contigs
|
87.9% (84.1%)
|
88.5% (80.4%)
|
85.5% (77.4%)
|
82.7% (69.5%)
|
82.5% (75.5%)
|
89.5% (85.1%)
|
93.9% (86.7%)
|
