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Table 1 Phaseolus vulgaris genes differentially expressed between navy and white kidney bean seeds two weeks after flowering.

From: Evaluation of diversity among common beans (Phaseolus vulgaris L.) from two centers of domestication using 'omics' technologies

Clone ID

GenBank

accession

Ratio WK:NBa

Annotation (BLAST hit and organism)

Functionb

Gm-r1070-1164

AW570504

5.353

calmodulin 2 [Medicago truncatula]

cb

Gm-r1088-5593

BF067176

5.246

annexin [Medicago truncatula]

cs

Gm-r1083-4862

BE023117

5.143

peroxidase [Glycine max]

def

Gm-b10BB-41

AI495218

5.238

RUBISCO small chain 1 precursor [Glycine max]

en

Gm-r1089-1548

BU927150

5.667

nuM1 [Medicago sativa]

oth

Gm-r1021-3096

AI495362

7.943

ubiquitin [Glycine max]

pm

Gm-r1021-1452

AI441940

7.113

ubiquitin [Lycopersicon esculentum]

pm

Gm-r1070-6513

AW186354

6.617

pectin methylesterase-like protein [Arabidopsis thaliana]

pm

Gm-r1083-3778

BE020202

5.450

ubiquitin [Glycine max]

pm

Gm-r1083-4103

BE020700

5.362

pentameric polyubiquitin

pm

Gm-r1021-951

AI443187

5.352

polyubiquitin containing 7 ubiquitin monomers

pm

Gm-r1070-3321

AW423503

12.032

putative transcriptional coactivator [Brassica rapa]

txn

Gm-r1070-8054

AW508573

8.634

heat shock factor protein 3 (HSF3)/heat shock transcription factor 3 (HSTF3) [Arabidopsis thaliana]

txn

Gm-r1089-2093

BG352926

8.534

glutamyl-tRNA synthetase [Arabidopsis thaliana]

tln

Gm-r1021-1432

AI440898

7.871

translation initiation factor IF-1 [Glycine max]

tln

Gm-r1070-8367

AW508710

6.222

putative small nuclear ribonucleoprotein polypeptide E [Oryza sativa (japonica cultivar-group)]

tln

Gm-r1089-2264

BE330222

6.167

elongation factor 1-alpha, putative [Arabidopsis thaliana]

tln

Gm-r1070-7717

AW472122

9.702

ribosomal protein [Petunia × hybrida]

tln-rc

Gm-r1089-7404

BQ298634

6.190

40 S ribosomal protein S21 (RPS21C) [Arabidopsis thaliana]

tln-rc

Gm-r1070-4290

AW396000

6.157

putative ribosomal protein [Capsicum annuum]

tln-rc

Gm-r1088-5929

BG882122

5.877

putative protein [Arabidopsis thaliana]

tln-rc

Gm-r1021-1062

AI442633

5.829

60 S ribosomal protein L24 [Prunus avium]

tln-rc

Gm-r1088-5173

BG790456

5.397

40 s ribosomal protein S23 [Euphorbia esula]

tln-rc

Gm-r1021-74

AI444100

5.237

putative ribosomal protein S29 [Oryza sativa (japonica cultivar-group)]

tln-rc

Gm-r1088-5497

BF066304

5.140

ubiquitin fusion protein/40 S ribosomal protein S27a [Zea mays]

tln-rc

Gm-r1083-2977

AW703688

5.027

zinc finger (C3HC4-type RING finger) protein-related [Arabidopsis thaliana]

tln-rc

Gm-r1083-442

AW278239

11.708

unknown protein [Arabidopsis thaliana]

unk

Gm-r1089-5254

BG507608

7.211

expressed protein [Arabidopsis thaliana]

unk

Gm-r1070-8007

AW472347

6.549

farnesylated protein [Cicer arietinum]

unk

Gm-r1089-4543

BI701778

5.519

putative leucine-rich repeat protein [Arabidopsis thaliana]

unk

Gm-r1089-565

AW397679

5.474

LIM domain-containing protein [Arabidopsis thaliana]

unk

Gm-r1070-8492

AW508223

0.167c

ripening-induced protein [Fragaria vesca]

met

  1. a List of annotated genes differentially expressed (p < 0.01) by an average ratio > 5-fold change.
  2. b Function abbreviations: cb-calcium ion binding, cs-cellular structure, def-defense, en-energy, oth-other, pm-protein modification, txn-transcription, tln-translation, tln-rc-translation-ribosomal component, unk-unknown, met-metabolism.
  3. c Value under 0.2 indicates greater than 5-fold expression in navy bean compared to white kidney bean (written as white kidney:navy, WK:NB)