Table 2 Position of the interruption in imperfect SSR.
From: Simple sequence repeat variation in the Daphnia pulex genome
| Â | Homopolymers | ||||
|---|---|---|---|---|---|
Repeat Size | End (obs) | Middle (obs) | End (exp) | Middle (exp) | p-value |
3 | 15,005 | 50 | 10,037 | 5,018 | 0 |
4 | 5,793 | 1,392 | 3,593 | 3,593 | 0 |
5 | 2,549 | 1,168 | 1,487 | 2,230 | 5.E-277 |
6 | 1,309 | 735 | 681 | 1,363 | 1.E-190 |
7 | 810 | 492 | 372 | 930 | 5.E-159 |
8 | 447 | 294 | 185 | 556 | 3.E-109 |
9 | 459 | 253 | 158 | 554 | 7.E-162 |
10 | 350 | 285 | 127 | 508 | 2.E-108 |
11 | 178 | 191 | 67 | 302 | 1.E-50 |
12 | 119 | 167 | 48 | 238 | 1.E-29 |
13 | 65 | 121 | 29 | 157 | 1.E-13 |
14 | 45 | 107 | 22 | 130 | 7.E-08 |
15 | 34 | 77 | 15 | 96 | 8.E-08 |
16 | 18 | 43 | 8 | 53 | 6.E-05 |
17 | 12 | 40 | 6 | 46 | 1.E-02 |
18 | 6 | 28 | 4 | 30 | 2.E-01 |
19 | 3 | 23 | 3 | 23 | 9.E-01 |
20 | 6 | 15 | 2 | 19 | 5.E-03 |
| Â | Dimers | ||||
Repeat Size | End (obs) | Middle (obs) | End (exp) | Middle (exp) | p-value |
3 | 1,588 | 641 | 1,486 | 743 | 5.E-06 |
4 | 332 | 208 | 270 | 270 | 9.E-08 |
5 | 121 | 83 | 82 | 122 | 2.E-08 |
6 | 65 | 61 | 42 | 84 | 1.E-05 |
7 | 58 | 53 | 32 | 79 | 3.E-08 |
8 | 47 | 29 | 19 | 57 | 1.E-13 |
9 | 39 | 30 | 15 | 54 | 7.E-12 |
10 | 17 | 10 | 5 | 22 | 2.E-08 |
11 | 11 | 7 | 3 | 15 | 2.E-06 |
12 | 9 | 7 | 3 | 13 | 2.E-05 |
13 | 7 | 4 | 2 | 9 | 9.E-06 |