TY - CHAP AU - Pomfret, J. AU - Knell, R. PY - 2006 DA - 2006// TI - Sexual selection and horn allometry in the dung beetle Euoniticellus intermedius BT - Animal Behaviour ID - Pomfret2006 ER - TY - JOUR AU - Emlen, D. J. AU - Nijhout, H. F. PY - 2000 DA - 2000// TI - The development and evolution of exaggerated morphologies in insects JO - Annual Review of Entomology VL - 45 UR - https://doi.org/10.1146/annurev.ento.45.1.661 DO - 10.1146/annurev.ento.45.1.661 ID - Emlen2000 ER - TY - JOUR AU - Emlen, D. J. AU - Marangelo, J. AU - Ball, B. AU - Cunningham, C. W. PY - 2005 DA - 2005// TI - Diversity in the weapons of sexual selection: Horn evolution in the beetle genus Onthophagus (Coleoptera : Scarabaeidae) JO - Evolution VL - 59 UR - https://doi.org/10.1111/j.0014-3820.2005.tb01044.x DO - 10.1111/j.0014-3820.2005.tb01044.x ID - Emlen2005 ER - TY - JOUR AU - Emlen, D. J. AU - Hunt, J. AU - Simmons, L. W. PY - 2005 DA - 2005// TI - Evolution of sexual dimorphism and male dimorphism in the expression of beetle horns: Phylogenetic evidence for modularity, evolutionary lability, and constraint JO - American Naturalist VL - 166 UR - https://doi.org/10.1086/444599 DO - 10.1086/444599 ID - Emlen2005 ER - TY - JOUR AU - Emlen, D. J. PY - 2008 DA - 2008// TI - The Evolution of Animal Weapons JO - Annual Review of Ecology Evolution and Systematics VL - 39 UR - https://doi.org/10.1146/annurev.ecolsys.39.110707.173502 DO - 10.1146/annurev.ecolsys.39.110707.173502 ID - Emlen2008 ER - TY - CHAP AU - Arrow, G. J. PY - 1951 DA - 1951// BT - Horned beetles, a study of the fantastic in nature PB - W. Junk CY - The Hague, UR - https://doi.org/10.1007/978-94-017-6178-9 DO - 10.1007/978-94-017-6178-9 ID - Arrow1951 ER - TY - JOUR AU - Simmons, L. W. AU - Emlen, D. J. PY - 2006 DA - 2006// TI - Evolutionary trade-off between weapons and testes JO - Proceedings of the National Academy of Sciences of the United States of America VL - 103 UR - https://doi.org/10.1073/pnas.0603474103 DO - 10.1073/pnas.0603474103 ID - Simmons2006 ER - TY - JOUR AU - Emlen, D. J. AU - Nijhout, H. F. PY - 2001 DA - 2001// TI - Hormonal control of male horn length dimorphism in Onthophagus taurus (Coleoptera : Scarabaeidae): a second critical period of sensitivity to juvenile hormone JO - Journal of Insect Physiology VL - 47 UR - https://doi.org/10.1016/S0022-1910(01)00084-1 DO - 10.1016/S0022-1910(01)00084-1 ID - Emlen2001 ER - TY - JOUR AU - Emlen, D. J. AU - Nijhout, H. F. PY - 1999 DA - 1999// TI - Hormonal control of male horn length dimorphism in the dung beetle Onthophagus taurus (Coleoptera : Scarabaeidae) JO - Journal of Insect Physiology VL - 45 UR - https://doi.org/10.1016/S0022-1910(98)00096-1 DO - 10.1016/S0022-1910(98)00096-1 ID - Emlen1999 ER - TY - JOUR AU - Moczek, A. P. AU - Cruickshank, T. E. AU - Shelby, A. PY - 2006 DA - 2006// TI - When ontogeny reveals what phylogeny hides: Gain and loss of horns during development and evolution of horned beetles JO - Evolution VL - 60 UR - https://doi.org/10.1111/j.0014-3820.2006.tb01868.x DO - 10.1111/j.0014-3820.2006.tb01868.x ID - Moczek2006 ER - TY - JOUR AU - Shelby, J. A. AU - Madewell, R. AU - Moczek, A. P. PY - 2007 DA - 2007// TI - Juvenile hormone mediates sexual dimorphism in horned beetles JO - Journal of Experimental Zoology Part B-Molecular and Developmental Evolution VL - 308B UR - https://doi.org/10.1002/jez.b.21165 DO - 10.1002/jez.b.21165 ID - Shelby2007 ER - TY - CHAP AU - Tyndalebiscoe, M. PY - 1993 DA - 1993// TI - Impact of Exotic Dung Beetles on Native Dung Beetles, Bush Flies and on Dung BT - Pest Control & Sustainable Agriculture ID - Tyndalebiscoe1993 ER - TY - JOUR AU - TyndaleBiscoe, M. AU - Vogt, W. G. PY - 1996 DA - 1996// TI - Population status of the bush fly, Musca vetustissima (Diptera: Muscidae), and native dung beetles (Coleoptera: Scarabaeinae) in south-eastern Australia in relation to establishment of exotic dung beetles JO - Bulletin of Entomological Research VL - 86 UR - https://doi.org/10.1017/S0007485300052433 DO - 10.1017/S0007485300052433 ID - TyndaleBiscoe1996 ER - TY - JOUR AU - Ridsdillsmith, T. J. PY - 1993 DA - 1993// TI - Asymmetric Competition in Cattle Dung Between 2 Species of Onthophagus Dung Beetle and the Bush Fly, Musca-Vetustissima JO - Ecological Entomology VL - 18 UR - https://doi.org/10.1111/j.1365-2311.1993.tb01096.x DO - 10.1111/j.1365-2311.1993.tb01096.x ID - Ridsdillsmith1993 ER - TY - JOUR AU - Nichols, E. AU - Spector, S. AU - Louzada, J. AU - Larsen, T. AU - Amequita, S. AU - Favila, M. E. AU - Scarabaeinae Res, N. PY - 2008 DA - 2008// TI - Ecological functions and ecosystem services provided by Scarabaeinae dung beetles JO - Biological Conservation VL - 141 UR - https://doi.org/10.1016/j.biocon.2008.04.011 DO - 10.1016/j.biocon.2008.04.011 ID - Nichols2008 ER - TY - JOUR AU - Davis, A. L. V. AU - Scholtz, C. H. AU - Dooley, P. W. AU - Bharm, N. AU - Kryger, U. PY - 2004 DA - 2004// TI - Scarabaeine dung beetles as indicators of biodiversity, habitat transformation and pest control chemicals in agro-ecosystems JO - South African Journal of Science VL - 100 ID - Davis2004 ER - TY - JOUR AU - Schoenly, K. PY - 1991 DA - 1991// TI - Food Web Structure in Dung and Carrion Arthropod Assemblages, Null Models and Monte-Carlo Simulation - Applications to Medical Veterinary Entomology JO - Journal of Agricultural Entomology VL - 8 ID - Schoenly1991 ER - TY - JOUR AU - Ururahy-Rodrigues, A. AU - Rafael, J. A. AU - Wanderley, R. F. AU - Marques, H. AU - Pujol-Luz, J. R. PY - 2008 DA - 2008// TI - Coprophanaeus lancifer (Linnaeus, 1767) (Coleoptera, Scarabaeidae) activity moves a man-size pig carcass: Relevant data for forensic taphonomy JO - Forensic Science International VL - 182 UR - https://doi.org/10.1016/j.forsciint.2008.09.009 DO - 10.1016/j.forsciint.2008.09.009 ID - Ururahy-Rodrigues2008 ER - TY - JOUR AU - Dadour, I. R. AU - Cook, D. F. AU - Fissioli, J. N. AU - Bailey, W. J. PY - 2001 DA - 2001// TI - Forensic entomology: application, education and research in Western Australia JO - Forensic Science International VL - 120 UR - https://doi.org/10.1016/S0379-0738(01)00420-0 DO - 10.1016/S0379-0738(01)00420-0 ID - Dadour2001 ER - TY - JOUR AU - Moczek, A. P. AU - Andrews, J. AU - Kijimoto, T. AU - Yerushalmi, Y. AU - Rose, D. J. PY - 2007 DA - 2007// TI - Emerging model systems in evo-devo: horned beetles and the origins of diversity JO - Evolution & Development VL - 9 UR - https://doi.org/10.1111/j.1525-142X.2007.00168.x DO - 10.1111/j.1525-142X.2007.00168.x ID - Moczek2007 ER - TY - JOUR AU - Moczek, A. P. PY - 2005 DA - 2005// TI - The evolution and development of novel traits, or how beetles got their horns JO - Bioscience VL - 55 UR - https://doi.org/10.1641/0006-3568(2005)055[0937:TEADON]2.0.CO;2 DO - 10.1641/0006-3568(2005)055[0937:TEADON]2.0.CO;2 ID - Moczek2005 ER - TY - JOUR AU - Emlen, D. J. PY - 1994 DA - 1994// TI - Environmental-Control Of Horn Length Dimorphism In The Beetle Onthophagus-Acuminatus (Coleoptera, Scarabaeidae) JO - Proceedings of the Royal Society of London Series B-Biological Sciences VL - 256 UR - https://doi.org/10.1098/rspb.1994.0060 DO - 10.1098/rspb.1994.0060 ID - Emlen1994 ER - TY - JOUR AU - Moczek, A. P. PY - 2010 DA - 2010// TI - Phenotypic plasticity and diversity in insects JO - Philosophical Transactions of the Royal Society B-Biological Sciences VL - 365 UR - https://doi.org/10.1098/rstb.2009.0263 DO - 10.1098/rstb.2009.0263 ID - Moczek2010 ER - TY - JOUR AU - Shafiei, M. AU - Moczek, A. P. AU - Nijhout, H. F. PY - 2001 DA - 2001// TI - Food availability controls the onset of metamorphosis in the dung beetle Onthophagus taurus (Coleoptera : Scarabaeidae) JO - Physiological Entomology VL - 26 UR - https://doi.org/10.1046/j.1365-3032.2001.00231.x DO - 10.1046/j.1365-3032.2001.00231.x ID - Shafiei2001 ER - TY - JOUR AU - Moczek, A. P. PY - 1998 DA - 1998// TI - Horn polyphenism in the beetle Onthophagus taurus: larval diet quality and plasticity in parental investment determine adult body size and male horn morphology JO - Behavioral Ecology VL - 9 UR - https://doi.org/10.1093/beheco/9.6.636 DO - 10.1093/beheco/9.6.636 ID - Moczek1998 ER - TY - JOUR AU - Moczek, A. P. PY - 1999 DA - 1999// TI - Facultative paternal investment in the polyphenic beetle Onthophagus taurus: the role of male morphology and social context JO - Behavioral Ecology VL - 10 UR - https://doi.org/10.1093/beheco/10.6.641 DO - 10.1093/beheco/10.6.641 ID - Moczek1999 ER - TY - JOUR AU - Moczek, A. P. AU - Emlen, D. J. PY - 1999 DA - 1999// TI - Proximate determination of male horn dimorphism in the beetle Onthophagus taurus (Coleoptera : Scarabaeidae) JO - Journal of Evolutionary Biology VL - 12 UR - https://doi.org/10.1046/j.1420-9101.1999.00004.x DO - 10.1046/j.1420-9101.1999.00004.x ID - Moczek1999 ER - TY - JOUR AU - Moczek, A. P. AU - Rose, D. AU - Sewell, W. AU - Kesselring, B. R. PY - 2006 DA - 2006// TI - Conservation, innovation, and the evolution of horned beetle diversity JO - Development Genes and Evolution VL - 216 UR - https://doi.org/10.1007/s00427-006-0087-2 DO - 10.1007/s00427-006-0087-2 ID - Moczek2006 ER - TY - JOUR AU - Moczek, A. P. AU - Nagy, L. M. PY - 2005 DA - 2005// TI - Diverse developmental mechanisms contribute to different levels of diversity in horned beetles JO - Evolution & Development VL - 7 UR - https://doi.org/10.1111/j.1525-142X.2005.05020.x DO - 10.1111/j.1525-142X.2005.05020.x ID - Moczek2005 ER - TY - JOUR AU - Kijimoto, T. AU - Costello, J. AU - Tang, Z. AU - Moczek, A. AU - Andrews, J. PY - 2009 DA - 2009// TI - EST and microarray analysis of horn development in Onthophagus beetles JO - BMC Genomics VL - 10 UR - https://doi.org/10.1186/1471-2164-10-504 DO - 10.1186/1471-2164-10-504 ID - Kijimoto2009 ER - TY - JOUR AU - Richards, S. AU - Gibbs, R. A. AU - Weinstock, G. M. AU - Brown, S. J. AU - Denell, R. AU - Beeman, R. W. AU - Gibbs, R. AU - Bucher, G. AU - Friedrich, M. AU - Grimmelikhuijzen, C. J. P. PY - 2008 DA - 2008// TI - The genome of the model beetle and pest Tribolium castaneum JO - Nature VL - 452 UR - https://doi.org/10.1038/nature06784 DO - 10.1038/nature06784 ID - Richards2008 ER - TY - STD TI - Solignac M, Zhang L, Mougel F, Li BS, Vautrin D, Monnerot M, Cornuet JM, Worley KC, Weinstock GM, Gibbs RA: The genome of Apis mellifera: dialog between linkage mapping and sequence assembly. Genome Biology. 2007, 8 (3): 10.1186/gb-2007-8-3-403. ID - ref32 ER - TY - CHAP AU - Beldade, P. AU - Rudd, S. AU - Gruber, J. D. AU - Long, A. D. PY - 2006 DA - 2006// TI - A wing expressed sequence tag resource for Bicyclus anynana butterflies, an evo-devo model BT - Bmc Genomics ID - Beldade2006 ER - TY - JOUR AU - Xia, Q. Y. AU - Wang, J. AU - Zhou, Z. Y. AU - Li, R. Q. AU - Fan, W. AU - Cheng, D. J. AU - Cheng, T. C. AU - Qin, J. J. AU - Duan, J. AU - Xu, H. F. PY - 2008 DA - 2008// TI - The genome of a lepidopteran model insect, the silkworm Bombyx mori JO - Insect Biochemistry and Molecular Biology VL - 38 UR - https://doi.org/10.1016/j.ibmb.2008.11.004 DO - 10.1016/j.ibmb.2008.11.004 ID - Xia2008 ER - TY - JOUR AU - Beldade, P. AU - McMillan, W. O. AU - Papanicolaou, A. PY - 2008 DA - 2008// TI - Butterfly genomics eclosing JO - Heredity VL - 100 UR - https://doi.org/10.1038/sj.hdy.6800934 DO - 10.1038/sj.hdy.6800934 ID - Beldade2008 ER - TY - JOUR AU - Denell, R. PY - 2008 DA - 2008// TI - Establishment of Tribolium as a Genetic Model System and Its Early Contributions to Evo-Devo JO - Genetics VL - 180 UR - https://doi.org/10.1534/genetics.104.98673 DO - 10.1534/genetics.104.98673 ID - Denell2008 ER - TY - JOUR AU - Shippy, T. D. AU - Brown, S. J. PY - 2005 DA - 2005// TI - Closing the gap: Comparative approaches to studying insect development in the red flour beetle Tribolium castaneum and other short and intermediate germ insects JO - Current Genomics VL - 6 UR - https://doi.org/10.2174/138920205775811434 DO - 10.2174/138920205775811434 ID - Shippy2005 ER - TY - JOUR AU - Brunetti, C. R. AU - Selegue, J. E. AU - Monteiro, A. AU - French, V. AU - Brakefield, P. M. AU - Carroll, S. B. PY - 2001 DA - 2001// TI - The generation and diversification of butterfly eyespot color patterns JO - Current Biology VL - 11 UR - https://doi.org/10.1016/S0960-9822(01)00502-4 DO - 10.1016/S0960-9822(01)00502-4 ID - Brunetti2001 ER - TY - JOUR AU - Saenko, S. V. AU - French, V. AU - Brakefield, P. M. AU - Beldade, P. PY - 2008 DA - 2008// TI - Conserved developmental processes and the formation of evolutionary novelties: examples from butterfly wings JO - Philosophical Transactions of the Royal Society B-Biological Sciences VL - 363 UR - https://doi.org/10.1098/rstb.2007.2245 DO - 10.1098/rstb.2007.2245 ID - Saenko2008 ER - TY - JOUR AU - Adams, H. A. AU - Southey, B. R. AU - Robinson, G. E. AU - Rodriguez-Zas, S. L. PY - 2008 DA - 2008// TI - Meta-analysis of genome-wide expression patterns associated with behavioral maturation in honey bees JO - Bmc Genomics VL - 9 UR - https://doi.org/10.1186/1471-2164-9-503 DO - 10.1186/1471-2164-9-503 ID - Adams2008 ER - TY - JOUR AU - Ament, S. A. AU - Corona, M. AU - Pollock, H. S. AU - Robinson, G. E. PY - 2008 DA - 2008// TI - Insulin signaling is involved in the regulation of worker division of labor in honey bee colonies JO - Proceedings of the National Academy of Sciences of the United States of America VL - 105 UR - https://doi.org/10.1073/pnas.0800630105 DO - 10.1073/pnas.0800630105 ID - Ament2008 ER - TY - JOUR AU - Whitfield, C. W. AU - Ben-Shahar, Y. AU - Brillet, C. AU - Leoncini, I. AU - Crauser, D. AU - LeConte, Y. AU - Rodriguez-Zas, S. AU - Robinson, G. E. PY - 2006 DA - 2006// TI - Genomic dissection of behavioral maturation in the honey bee JO - Proceedings of the National Academy of Sciences of the United States of America VL - 103 UR - https://doi.org/10.1073/pnas.0606909103 DO - 10.1073/pnas.0606909103 ID - Whitfield2006 ER - TY - JOUR AU - Moczek, A. P. AU - Rose, D. J. PY - 2009 DA - 2009// TI - Differential recruitment of limb patterning genes during development and diversification of beetle horns JO - Proceedings of the National Academy of Sciences of the United States of America VL - 106 UR - https://doi.org/10.1073/pnas.0809668106 DO - 10.1073/pnas.0809668106 ID - Moczek2009 ER - TY - JOUR AU - Kijimoto, T. AU - Andrews, J. AU - Moczek, A. PY - 2010 DA - 2010// TI - Programed cell death shapes the expression of horns within and between species of horned beetles JO - Evol Dev VL - 12 UR - https://doi.org/10.1111/j.1525-142X.2010.00431.x DO - 10.1111/j.1525-142X.2010.00431.x ID - Kijimoto2010 ER - TY - JOUR AU - Wasik, B. AU - Rose, D. AU - Moczek, A. PY - 2010 DA - 2010// TI - Beetle horns are regulated by the Hox gene, Sex combs reduced, in a species- and sex-specific manner JO - Evol Dev VL - 12 UR - https://doi.org/10.1111/j.1525-142X.2010.00422.x DO - 10.1111/j.1525-142X.2010.00422.x ID - Wasik2010 ER - TY - CHAP AU - Snell-Rood, E. C. AU - Cash, A. AU - Han, M. V. AU - Kijimoto, T. AU - Andrews, J. AU - Moczek, A. P. PY - 2010 DA - 2010// TI - Developmental decoupling of alternative phenotypes: insights from the transcriptomes of horn-polyphenic beetles BT - Evolution ID - Snell-Rood2010 ER - TY - STD TI - Comprehensive characterization of the Drosophila transcriptome. [http://www.modencode.org/Celniker.shtml] UR - http://www.modencode.org/Celniker.shtml ID - ref47 ER - TY - STD TI - GS De Novo Assembler Software. [http://454.com/products-solutions/analysis-tools/gs-de-novo-assembler.asp] UR - http://454.com/products-solutions/analysis-tools/gs-de-novo-assembler.asp ID - ref48 ER - TY - JOUR AU - Chevreux, B. AU - Pfisterer, T. AU - Drescher, B. AU - Driesel, A. J. AU - Muller, W. E. AU - Wetter, T. AU - Suhai, S. PY - 2004 DA - 2004// TI - Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs JO - Genome Res VL - 14 UR - https://doi.org/10.1101/gr.1917404 DO - 10.1101/gr.1917404 ID - Chevreux2004 ER - TY - STD TI - Smit AFA, Hubley R, Green P: RepeatMasker Open-3.0. ID - ref50 ER - TY - JOUR AU - Jurka, J. AU - Kapitonov, V. V. AU - Pavlicek, A. AU - Klonowski, P. AU - Kohany, O. AU - Walichiewicz, J. PY - 2005 DA - 2005// TI - Repbase Update, a database of eukaryotic repetitive elements JO - Cytogenet Genome Res VL - 110 UR - https://doi.org/10.1159/000084979 DO - 10.1159/000084979 ID - Jurka2005 ER - TY - STD TI - BLAST database ftp. [ftp://ftp.ncbi.nlm.nih.gov/blast/db/] UR - ftp://ftp.ncbi.nlm.nih.gov/blast/db/ ID - ref52 ER - TY - JOUR AU - Huson, D. H. AU - Auch, A. F. AU - Qi, J. AU - Schuster, S. C. PY - 2007 DA - 2007// TI - MEGAN analysis of metagenomic data JO - Genome Res VL - 17 UR - https://doi.org/10.1101/gr.5969107 DO - 10.1101/gr.5969107 ID - Huson2007 ER - TY - STD TI - NCBI HomoloGene. [http://www.ncbi.nlm.nih.gov/homologene] UR - http://www.ncbi.nlm.nih.gov/homologene ID - ref54 ER - TY - JOUR AU - Letunic, I. AU - Yamada, T. AU - Kanehisa, M. AU - Bork, P. PY - 2008 DA - 2008// TI - iPath: interactive exploration of biochemical pathways and networks JO - Trends Biochem Sci VL - 33 UR - https://doi.org/10.1016/j.tibs.2008.01.001 DO - 10.1016/j.tibs.2008.01.001 ID - Letunic2008 ER - TY - JOUR AU - Kucharski, R. AU - Maleszka, J. AU - Foret, S. AU - Maleszka, R. PY - 2008 DA - 2008// TI - Nutritional control of reproductive status in honeybees via DNA methylation JO - Science VL - 319 UR - https://doi.org/10.1126/science.1153069 DO - 10.1126/science.1153069 ID - Kucharski2008 ER - TY - JOUR AU - Emlen, D. J. AU - Szafran, Q. AU - Corley, L. S. AU - Dworkin, I. PY - 2006 DA - 2006// TI - Insulin signaling and limb-patterning: candidate pathways for the origin and evolutionary diversification of beetle 'horns' JO - Heredity VL - 97 UR - https://doi.org/10.1038/sj.hdy.6800868 DO - 10.1038/sj.hdy.6800868 ID - Emlen2006 ER - TY - STD TI - GigaBayes - The MarthLab. [citeulike-article-id:5081826], [http://bioinformatics.bc.edu/marthlab/GigaBayes] UR - http://bioinformatics.bc.edu/marthlab/GigaBayes ID - ref58 ER - TY - JOUR AU - Hahn, D. A. AU - Ragland, G. J. AU - Shoemaker, D. D. AU - Denlinger, D. L. PY - 2009 DA - 2009// TI - Gene discovery using massively parallel pyrosequencing to develop ESTs for the flesh fly Sarcophaga crassipalpis JO - Bmc Genomics VL - 10 UR - https://doi.org/10.1186/1471-2164-10-234 DO - 10.1186/1471-2164-10-234 ID - Hahn2009 ER - TY - CHAP AU - Schwarz, D. AU - Robertson, H. AU - Feder, J. AU - Varala, K. AU - Hudson, M. AU - Ragland, G. AU - Hahn, D. AU - Berlocher, S. PY - 2009 DA - 2009// TI - Sympatric ecological speciation meets pyrosequencing: sampling the transcriptome of the apple maggot Rhagoletis pomonella BT - Bmc Genomics ID - Schwarz2009 ER - TY - CHAP AU - Grimaldi, D. A. AU - Engel, M. S. PY - 2005 DA - 2005// BT - Evolution of the insects PB - Cambridge University Press CY - Cambridge, UK; New York, NY ID - Grimaldi2005 ER - TY - JOUR AU - Goidanich, A. AU - Malan, C. PY - 1962 DA - 1962// TI - Sulla fonte di allimentazione e sulla microflora aerobica del nido pedotrofico e dell'apparato digerente delle larve di Scarabei coprofagi (Coleoptera: Scarabaeidae) JO - Atti Accad Sci Torino VL - 96 ID - Goidanich1962 ER - TY - JOUR AU - Goidanich, A. AU - Malan, C. PY - 1964 DA - 1964// TI - Sulla nidificatione pedotrofica di alcune specie di Onthophagus europei e sulla microflora aerobica dell'apparato digerente delle larve di Onthophagus taurus Schreber (Coleoptera: Scarabaeidae) JO - Ann Fac Sci Agr Univ Turino VL - 2 ID - Goidanich1964 ER - TY - JOUR AU - Wheat, C. PY - 2010 DA - 2010// TI - Rapidly developing functional genomics in ecological model systems via 454 transcriptome sequencing JO - Genetica VL - 138 UR - https://doi.org/10.1007/s10709-008-9326-y DO - 10.1007/s10709-008-9326-y ID - Wheat2010 ER - TY - JOUR AU - Barker, M. AU - Dlugosch, K. AU - Reddy, A. AU - Amyotte, S. AU - Rieseberg, L. PY - 2009 DA - 2009// TI - SCARF: maximizing next-generation EST assemblies for evolutionary and population genomic analyses JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp011 DO - 10.1093/bioinformatics/btp011 ID - Barker2009 ER - TY - JOUR AU - O'Neil, S. AU - Dzurisin, J. AU - Carmichael, R. AU - Lobo, N. AU - Emrich, S. AU - Hellmann, J. PY - 2010 DA - 2010// TI - Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon JO - BMC Genomics VL - 11 UR - https://doi.org/10.1186/1471-2164-11-310 DO - 10.1186/1471-2164-11-310 ID - O'Neil2010 ER - TY - JOUR AU - Surget-Groba, Y. AU - Montoya-Burgos, J. PY - 2010 DA - 2010// TI - Optimization of de novo transcriptome assembly from next-generation sequencing data JO - Genome Res VL - 20 UR - https://doi.org/10.1101/gr.103846.109 DO - 10.1101/gr.103846.109 ID - Surget-Groba2010 ER - TY - JOUR AU - Papanicolaou, A. AU - Stierli, R. AU - Ffrench-Constant, R. AU - Heckel, D. PY - 2009 DA - 2009// TI - Next generation transcriptomes for next generation genomes using est2assembly JO - BMC Bioinformatics VL - 10 UR - https://doi.org/10.1186/1471-2105-10-447 DO - 10.1186/1471-2105-10-447 ID - Papanicolaou2009 ER - TY - JOUR AU - Bundock, P. C. AU - Eliott, F. G. AU - Ablett, G. AU - Benson, A. D. AU - Casu, R. E. AU - Aitken, K. S. AU - Henry, R. J. PY - 2009 DA - 2009// TI - Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing JO - Plant Biotechnology Journal VL - 7 UR - https://doi.org/10.1111/j.1467-7652.2009.00401.x DO - 10.1111/j.1467-7652.2009.00401.x ID - Bundock2009 ER - TY - JOUR AU - Hale, M. C. AU - McCormick, C. R. AU - Jackson, J. R. AU - DeWoody, J. A. PY - 2009 DA - 2009// TI - Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery JO - Bmc Genomics VL - 10 UR - https://doi.org/10.1186/1471-2164-10-203 DO - 10.1186/1471-2164-10-203 ID - Hale2009 ER - TY - JOUR AU - Meyer, E. AU - Aglyamova, G. V. AU - Wang, S. AU - Buchanan-Carter, J. AU - Abrego, D. AU - Colbourne, J. K. AU - Willis, B. L. AU - Matz, M. V. PY - 2009 DA - 2009// TI - Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx JO - Bmc Genomics VL - 10 UR - https://doi.org/10.1186/1471-2164-10-18 DO - 10.1186/1471-2164-10-18 ID - Meyer2009 ER - TY - JOUR AU - Novaes, E. AU - Drost, D. R. AU - Farmerie, W. G. AU - Pappas, G. J. AU - Grattapaglia, D. AU - Sederoff, R. R. AU - Kirst, M. PY - 2008 DA - 2008// TI - High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome JO - Bmc Genomics VL - 9 UR - https://doi.org/10.1186/1471-2164-9-312 DO - 10.1186/1471-2164-9-312 ID - Novaes2008 ER - TY - JOUR AU - Drummond, D. A. AU - Bloom, J. D. AU - Adami, C. AU - Wilke, C. O. AU - Arnold, F. H. PY - 2005 DA - 2005// TI - Why highly expressed proteins evolve slowly JO - Proceedings of the National Academy of Sciences of the United States of America VL - 102 UR - https://doi.org/10.1073/pnas.0504070102 DO - 10.1073/pnas.0504070102 ID - Drummond2005 ER - TY - JOUR AU - Drummond, D. A. AU - Wilke, C. O. PY - 2008 DA - 2008// TI - Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution JO - Cell VL - 134 UR - https://doi.org/10.1016/j.cell.2008.05.042 DO - 10.1016/j.cell.2008.05.042 ID - Drummond2008 ER - TY - JOUR AU - Hastings, K. E. M. PY - 1996 DA - 1996// TI - Strong evolutionary conservation of broadly expressed protein isoforms in the troponin I gene family and other vertebrate gene families JO - Journal of Molecular Evolution VL - 42 UR - https://doi.org/10.1007/BF02338796 DO - 10.1007/BF02338796 ID - Hastings1996 ER - TY - JOUR AU - Pal, C. AU - Papp, B. AU - Lercher, M. J. PY - 2006 DA - 2006// TI - An integrated view of protein evolution JO - Nature Reviews Genetics VL - 7 UR - https://doi.org/10.1038/nrg1838 DO - 10.1038/nrg1838 ID - Pal2006 ER - TY - JOUR AU - Emlen, D. J. AU - Allen, C. E. PY - 2003 DA - 2003// TI - Genotype to phenotype: Physiological control of trait size and scaling in insects JO - Integrative and Comparative Biology VL - 43 UR - https://doi.org/10.1093/icb/43.5.617 DO - 10.1093/icb/43.5.617 ID - Emlen2003 ER - TY - JOUR AU - Emlen, D. J. PY - 2000 DA - 2000// TI - Integrating development with evolution: A case study with beetle horns JO - Bioscience VL - 50 UR - https://doi.org/10.1641/0006-3568(2000)050[0403:IDWEAC]2.0.CO;2 DO - 10.1641/0006-3568(2000)050[0403:IDWEAC]2.0.CO;2 ID - Emlen2000 ER - TY - JOUR AU - Moczek, A. P. AU - Emlen, D. J. PY - 2000 DA - 2000// TI - Male horn dimorphism in the scarab beetle, Onthophagus taurus: do alternative reproductive tactics favour alternative phenotypes? JO - Animal Behaviour VL - 59 UR - https://doi.org/10.1006/anbe.1999.1342 DO - 10.1006/anbe.1999.1342 ID - Moczek2000 ER - TY - JOUR AU - Shepherd, B. L. AU - Prange, H. D. AU - Moczek, A. P. PY - 2008 DA - 2008// TI - Some like it hot: Body and weapon size affect thermoregulation in horned beetles JO - Journal of Insect Physiology VL - 54 UR - https://doi.org/10.1016/j.jinsphys.2007.12.007 DO - 10.1016/j.jinsphys.2007.12.007 ID - Shepherd2008 ER - TY - JOUR AU - Simmons, L. W. AU - Emlen, D. J. AU - Tomkins, J. L. PY - 2007 DA - 2007// TI - Sperm competition games between sneaks and guards: A comparative analysis using dimorphic male beetles JO - Evolution VL - 61 UR - https://doi.org/10.1111/j.1558-5646.2007.00243.x DO - 10.1111/j.1558-5646.2007.00243.x ID - Simmons2007 ER - TY - CHAP AU - Gilbert, S. F. AU - Epel, D. PY - 2009 DA - 2009// BT - Ecological developmental biology : integrating epigenetics, medicine, and evolution PB - Sinauer Associates CY - Sunderland, Mass. ID - Gilbert2009 ER - TY - JOUR AU - Wang, Y. AU - Jorda, M. AU - Jones, P. L. AU - Maleszka, R. AU - Ling, X. AU - Robertson, H. M. AU - Mizzen, C. A. AU - Peinado, M. A. AU - Robinson, G. E. PY - 2006 DA - 2006// TI - Functional CpG methylation system in a social insect JO - Science VL - 314 UR - https://doi.org/10.1126/science.1135213 DO - 10.1126/science.1135213 ID - Wang2006 ER - TY - JOUR AU - Kronforst, M. R. AU - Gilley, D. C. AU - Strassmann, J. E. AU - Queller, D. C. PY - 2008 DA - 2008// TI - DNA methylation is widespread across social Hymenoptera JO - Current Biology VL - 18 UR - https://doi.org/10.1016/j.cub.2008.02.015 DO - 10.1016/j.cub.2008.02.015 ID - Kronforst2008 ER - TY - JOUR AU - Elango, N. AU - Hunt, B. G. AU - Goodisman, M. A. D. AU - Yi, S. V. PY - 2009 DA - 2009// TI - DNA methylation is widespread and associated with differential gene expression in castes of the honeybee, Apis mellifera JO - Proceedings of the National Academy of Sciences of the United States of America VL - 106 UR - https://doi.org/10.1073/pnas.0900301106 DO - 10.1073/pnas.0900301106 ID - Elango2009 ER - TY - JOUR AU - Wiedmann, R. T. AU - Smith, T. P. L. AU - Nonneman, D. J. PY - 2008 DA - 2008// TI - SNP discovery in swine by reduced representation and high throughput pyrosequencing JO - Bmc Genetics VL - 9 UR - https://doi.org/10.1186/1471-2156-9-81 DO - 10.1186/1471-2156-9-81 ID - Wiedmann2008 ER - TY - JOUR AU - Schneider, K. AU - Kulosa, D. AU - Soerensen, T. R. AU - Mohring, S. AU - Heine, M. AU - Durstewitz, G. AU - Polley, A. AU - Weber, E. AU - Jamsari Lein, J. PY - 2007 DA - 2007// TI - Analysis of DNA polymorphisms in sugar beet (Beta vulgaris L.) and development of an SNP-based map of expressed genes JO - Theoretical and Applied Genetics VL - 115 UR - https://doi.org/10.1007/s00122-007-0591-4 DO - 10.1007/s00122-007-0591-4 ID - Schneider2007 ER - TY - JOUR AU - Snell-Rood, E. AU - van Dyken, J. D. AU - Cruickshank, T. AU - Wade, M. AU - Moczek, A. PY - 2010 DA - 2010// TI - Toward a population genetic framework of developmental evolution: costs, limits, and consequences of phenotypic plasticity JO - BioEssays VL - 32 UR - https://doi.org/10.1002/bies.200900132 DO - 10.1002/bies.200900132 ID - Snell-Rood2010 ER - TY - JOUR AU - Lu, Y. AU - Rosenfeld, R. AU - Simon, I. AU - Nau, G. AU - Bar-Joseph, Z. PY - 2008 DA - 2008// TI - A probabilistic generative model for GO enrichment analysis JO - Nucleic Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkn434 DO - 10.1093/nar/gkn434 ID - Lu2008 ER - TY - STD TI - EstClean. [http://sourceforge.net/projects/estclean/] UR - http://sourceforge.net/projects/estclean/ ID - ref90 ER - TY - STD TI - NCBI UniGene. [http://www.ncbi.nlm.nih.gov/unigene] UR - http://www.ncbi.nlm.nih.gov/unigene ID - ref91 ER - TY - STD TI - Kim HS, Murphy T, Xia J, Caragea D, Park Y, Beeman RW, Lorenzen MD, Butcher S, Manak JR, Brown SJ: BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Nucleic Acids Res. D437-442. 38 Database ID - ref92 ER - TY - STD TI - ORF Finder (Open Reading Frame Finder). [http://www.ncbi.nlm.nih.gov/projects/gorf/] UR - http://www.ncbi.nlm.nih.gov/projects/gorf/ ID - ref93 ER - TY - STD TI - OrfPredictor. [http://proteomics.ysu.edu/tools/OrfPredictor.html] UR - http://proteomics.ysu.edu/tools/OrfPredictor.html ID - ref94 ER - TY - JOUR AU - Götz, S. AU - García-Gómez, J. AU - Terol, J. AU - Williams, T. AU - Nagaraj, S. AU - Nueda, M. AU - Robles, M. AU - Talón, M. AU - Dopazo, J. AU - Conesa, A. PY - 2008 DA - 2008// TI - High-throughput functional annotation and data mining with the Blast2GO suite JO - Nucleic Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkn176 DO - 10.1093/nar/gkn176 ID - Götz2008 ER - TY - STD TI - Perl Graph Module. [http://search.cpan.org/dist/Graph/] UR - http://search.cpan.org/dist/Graph/ ID - ref96 ER - TY - JOUR AU - Long, M. AU - Betrán, E. AU - Thornton, K. AU - Wang, W. PY - 2003 DA - 2003// TI - The origin of new genes: glimpses from the young and old JO - Nat Rev Genet VL - 4 UR - https://doi.org/10.1038/nrg1204 DO - 10.1038/nrg1204 ID - Long2003 ER - TY - JOUR AU - Fiston-Lavier, A. AU - Anxolabehere, D. AU - Quesneville, H. PY - 2007 DA - 2007// TI - A model of segmental duplication formation in Drosophila melanogaster JO - Genome Res VL - 17 UR - https://doi.org/10.1101/gr.6208307 DO - 10.1101/gr.6208307 ID - Fiston-Lavier2007 ER - TY - STD TI - Mosaik. [http://bioinformatics.bc.edu/marthlab/Mosaik] UR - http://bioinformatics.bc.edu/marthlab/Mosaik ID - ref99 ER - TY - JOUR AU - Conesa, A. AU - Gotz, S. AU - Garcia-Gomez, J. M. AU - Terol, J. AU - Talon, M. AU - Robles, M. PY - 2005 DA - 2005// TI - Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti610 DO - 10.1093/bioinformatics/bti610 ID - Conesa2005 ER -