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Table 3 Clustering using sequence matches to HomoloGene

From: Gene discovery in the horned beetle Onthophagus taurus

E-value

Contigs

Singletons

Total

 

Query

Subject

Query

Subject

Query

Subject

1 × 10-5

17,160

11,504

(7,990)

1,807

2,934

(1,373)

18,967

12,464

(8,504)

1 × 10-20

11,032

8,084

(6,557)

845

1,145

(725)

11,877

8,524

(6,821)

1 × 10-50

5,711

4,767

(4,251)

183

190

(163)

5,894

4,846

(4,325)

  1. The total numbers of non-redundant Onthophagus sequences with matches against the HomoloGene [54] database at the indicated E-value cut-offs. "Query" denotes the total number of Onthophagus sequences with matches against HomoloGene sequences, and "subject" denotes the total number of sequences from the HomoloGene database with matches against Onthophagus. The numbers of cases where the all Onthophagus sequences in a cluster have the best match to the same HomoloGene sequence are shown in parenthesis.
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BMC Genomics

ISSN: 1471-2164

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