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Table 4 Candidate developmental genes

From: Gene discovery in the horned beetle Onthophagus taurus

Sequence ID

Accession

E-value

Description

GO

contig19562

NP_001034532.1

9.00E-99

brachyury

1

FQTIJGT01DV55X

NP_001034527.2

2.00E-53

Kruppel

1

contig27749

XP_970831.2

1.00E-23

PREDICTED: similar to fibroblast growth factor receptor

1

contig14082

XP_001602830.1

1.00E-137

PREDICTED: similar to epidermal growth factor receptor

1, 2, 4, 21

contig13096

XP_001654153.1

1.00E-108

decapentaplegic

1, 4, 21

contig18654

XP_975017.2

0

PREDICTED: similar to ets

1, 8

contig18756

BAD00045.1

0

armadillo protein

1, 9, 16

contig13865

XP_970668.2

1.00E-58

PREDICTED: similar to Homeobox protein cut

1, 10

contig04562

NP_001107765.1

3.00E-45

hairy

1, 10, 21

FQTIJGT02F4ASF

NP_001034490.1

4.00E-23

pangolin

1, 15

contig17509

XP_968516.2

0

PREDICTED: similar to par-1 CG8201-PA

1, 15

contig00028

XP_967537.1

1.00E-180

PREDICTED: similar to COUP-TF/Svp nuclear hormone receptor

1, 17

contig14224

XP_970678.1

1.00E-156

PREDICTED: similar to thickveins CG14026-PA

1, 21

contig08201

XP_974235.1

6.00E-37

PREDICTED: similar to DNA cytosine-5 methyltransferase

3

FQTIJGT01BFBE3

XP_974854.1

8.00E-69

PREDICTED: similar to cornichon protein, putative

2

contig19544

XP_966833.1

0

PREDICTED: similar to extracellular signal-regulated kinase

2

contig25027

XP_968594.2

1.00E-115

PREDICTED: similar to Ecdysone-induced protein 63E CG10579-PK

5

contig04278

XP_396527.3

1.00E-176

PREDICTED: similar to Ecdysone-induced protein 78C CG18023-PA,

5, 17

contig32340

XP_001847468.1

5.00E-89

ras

5

FQTIJGT01E6R2M

NP_001116500.1

2.00E-12

matrix metalloproteinase 1 isoform 2

5, 9

contig20604

XP_001663781.1

3.00E-17

phosphatidylinositol 3-kinase regulatory subunit

6

contig33698

XP_001952079.1

1.00E-19

PREDICTED: similar to insulin receptor

6

contig26215

XP_974994.1

4E-70

PREDICTED: similar to Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN

6, 8

contig36880

NP_001128399.1

2.00E-14

epoxide hydrolase 1

7

contig20325

NP_001034501.1

0

extradenticle

4

contig04888

XP_969771.2

6.00E-45

PREDICTED: dachshund

4

contig29998

XP_001944887.1

9.00E-75

PREDICTED: similar to BarH1 CG5529-PA

4

contig07732

XP_969484.2

3.00E-30

PREDICTED: similar to LIM homeobox 1b

4

contig01196

NP_001034489.1

1.00E-152

homothorax

4, 18

FQTIJGT02HBUI7

NP_001107853.1

1.00E-38

Notch

11

contig26747

XP_975449.2

4E-20

PREDICTED: similar to FAS-associated factor 1, putative

8

contig14846

NP_001034510.1

1E-126

transcription factor deformed

8, 18

contig03161

AAO16241.1

3.00E-86

effector caspase; Sl-caspase-1

9

mira_c460

XP_001810562.1

3.00E-31

PREDICTED: similar to caspase

9

contig02560

XP_966617.2

2.00E-77

PREDICTED: similar to E74

9

contig02035

XP_967068.2

2.00E-19

PREDICTED: similar to NAD-dependent deacetylase sirtuin-1

9, 12

contig22079

XP_970822.2

0

PREDICTED: similar to Darkener of apricot CG33553-PG

9, 19

contig20962

NP_001107840.1

2.00E-67

Dicer-2

12

contig04521

XP_971295.2

0

PREDICTED: Argonaute-1

12

contig35987

XP_624270.2

1.00E-109

PREDICTED: similar to brahma CG5942-PA, isoform A, partial

12

contig03878

XP_975376.1

1.00E-70

PREDICTED: similar to Headcase protein

12

contig04464

XP_966633.1

0

PREDICTED: similar to histone deacetylase

12

contig35227

NP_001107838.1

5.00E-40

aristaless

10

contig36981

XP_001814382.1

1.00E-156

PREDICTED: similar to fringe CG10580-PA

10, 11

contig09571

XP_975412.2

2.00E-53

PREDICTED: similar to suppressor of fused

13

contig04709

XP_975408.1

0

PREDICTED: similar to supernumerary limbs CG3412-PA

13, 15

FQTIJGT02G66FW

EEB10664.1

6.00E-37

Antennapedia, putative

18

contig06860

AAK96031.1

3.00E-82

homeodomain transcription factor Prothoraxless

18

contig04152

NP_001107807.1

0

maxillopedia

18

contig08220

XP_971065.1

5.00E-96

PREDICTED: similar to rotated abdomen CG6097-PA

18

contig05318

NP_001034497.1

1.00E-107

ultrabithorax

18

contig02060

XP_971671.2

4.00E-44

PREDICTED: similar to fruitless

20, 19

contig25669

XP_001807448.1

1.00E-58

PREDICTED: similar to BmDSX-F

19

contig14519

XP_971676.1

2.00E-70

PREDICTED: similar to iroquois-class homeodomain protein irx

14

contig15982

XP_968422.1

1.00E-117

PREDICTED: similar to cadherin

14, 21

contig22068

NP_001127850.1

2.00E-88

smoothened

14, 21

contig31931

NP_001107650.1

2.00E-94

ecdysone receptor isoform A

17

FQTIJGT02HPUTA

XP_001845875.1

6.00E-67

nuclear hormone receptor FTZ-F1 beta

17, 22

FQTIJGT02GV771

XP_971362.2

7.00E-18

PREDICTED: similar to ecdysone inducible protein 75

17

contig03369

CAH69897.1

1.00E-162

retinoid X receptor

17

contig04903

NP_001107813.1

1.00E-122

glass bottom boat protein

21

contig05941

XP_971286.2

0

PREDICTED: similar to mothers against dpp protein

21

contig07923

EEB19343.1

8.00E-19

porcupine, putative

16

contig01101

XP_968118.1

5.00E-45

PREDICTED: similar to frizzled

16

contig08319

XP_623523.1

4.00E-75

PREDICTED: similar to frizzled 7

16

contig03739

XP_974963.2

1.00E-172

PREDICTED: similar to jnk

16

contig13446

XP_973551.1

1.00E-150

PREDICTED: similar to legless CG2041-PA

16

FQTIJGT02I9RJB

XP_969261.1

3.00E-13

PREDICTED: similar to Wnt11 protein

16

contig29078

XP_968055.2

1.00E-77

PREDICTED: similar to Wnt6

16

contig19316

XP_974084.1

1.00E-70

PREDICTED: similar to wntless CG6210-PB

16

contig19245

XP_001847858.1

1.00E-168

wingless protein

16

  1. Examples of contigs representing genes putatively involved in Onthophagus development. contig/singleton ID, accession number from NCBI NR dataset, E-value, and gene description are shown. Specific GO terms shown here are: 1. cell fate determination, 2. epidermal growth factor receptor signaling pathway, 3. DNA methylation, 4. leg disc pattern formation, 5. instar larval or pupal development, 6. insulin receptor signaling pathway, 7. juvenile hormone metabolic process, 8. positive regulation of programmed cell death, 9. programmed cell death, 10. regulation of Notch signaling pathway, 11. Notch signaling pathway, 12. regulation of gene expression, epigenetic, 13. regulation of smoothened signaling pathway, 14. smoothened signaling pathway, 15. regulation of Wnt receptor signaling pathway, 16. Wnt receptor signaling pathway, 17. steroid hormone receptor activity, 18. segment specification, 19. sex differentiation, 20. sex determination, 21. wing disc pattern formation, 22. response to ecdysone.