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Table 1 Summary of genotyping and re-sequencing of 11 genes determining growth habit and one gene determining inflorescence type

From: Genome-wide SNPs and re-sequencing of growth habit and inflorescence genes in barley: implications for association mapping in germplasm arrays varying in size and structure

Locus VRN-H1 VRN-H2 VRN-H2 VRN-H2 VRN-H2 VRN-H3 VRS1 PPD-H2 PPD-H1 FR-H2 FR-H2 FR-H2
Gene BM5A ZCCT-Ha ZCCT-Hb ZCCT-Hc HvSNF2 HvFT1 HvHOX1 HvFT3 HvPRR7 HvCBF3 HvCBF6 HvCBF9
Accessions Genotyped(1) 102 102 102 102 102 102 102 102 102 0 102 0
Number of alleles/amplicon sizes 5 2 2 2 2 2 6 2 2 0 2 0
Accessions re-sequenced(2) 102 - - - 30 102 102 26 30 30 30 30
Number of haplotypes 6 - - - 4 7 7 3 6 5 6 6
Sequence length (bp) 668 - - - 632 5670 1192 1467 1355 874 913 988
  1. (1) Gel-based characterization of SNP, InDels
  2. (2) Cloning and sequencing of a gene or putative functional domain within a gene
  3. ZCCT-H gene family members are present or absent