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Table 2 Cardiac enriched miRNAs

From: New methods for next generation sequencing based microRNA expression profiling

miRNA transcript

Location

EM-s

HT-s

Fold Difference

miRNA| ENSGALT00000028994| 5p~|gga-mir-133a-1| sense #

chr2:105670407-105670428|-

0 ± 0

9 ± 1.3

inf

miRNA| ENSGALT00000028999| 3p| gga-mir-1a-1| sense

chr20:8107876-8107896|-

0 ± 0

23 ± 6.9

inf

miRNA| ENSGALT00000029007| 5p~| gga-mir-133c| sense #

chr23:4664062-4664083|+

0 ± 0

8 ± 2.9

inf

miRNA| ENSGALT00000035316| 5p| gga-mir-499| sense #

chr20:2599386-2599408|-

2.8 ± 1.3

2542.5 ± 574

906

miRNA| ENSGALT00000035316| 3p~| gga-mir-499| sense #

chr20:2599348-2599370|-

15.5 ± 1.1

3048.4 ± 318.2

196

miRNA| ENSGALT00000029007| 3p| gga-mir-133c| sense #

chr23:4664099-4664120|+

2.8 ± 1.3

496.9 ± 44.9

177

miRNA| ENSGALT00000029006| 5p~| gga-mir-1b| sense

chr23:4663916-4663936|+

1.7 ± 1.1

142.9 ± 22.7

83

miRNA| ENSGALT00000028999| 5p~| gga-mir-1a-1| sense

chr20:8107838-8107858|+

35.4 ± 20.4

2366.1 ± 777.2

67

miRNA| ENSGALT00000029006| 3p| gga-mir-1b| sense

chr23:4663953-4663973|+

91.1 ± 24.2

6086.5 ± 1328.3

67

miRNA| ENSGALT00000042439| 5p|| sense

chr4:2151195-2151215|+

1.4 ± 2

32.5 ± 0.4

23

miRNA| ENSGALT00000042439| 3p|| sense #

chr4:2151238-2151260|+

30.2 ± 6.1

1277.3 ± 123.2

42

miRNA| ENSGALT00000035276| 3p| gga-mir-490| sense

chr1:59948716-59948737|-

45.3 ± 12.6

1447.5 ± 231.3

32

miRNA| ENSGALT00000042468| 5p| gga-mir-1773| sense

chr20:8109147-8109169|+

1.1 ± 0.2

25.5 ± 3.8

23

miRNA| ENSGALT00000042438| 3p| gga-mir-1799| sense

chr5:42365992-42366012|+

8.6 ± 6.9

130.5 ± 0.5

15

miRNA| ENSGALT00000035276| 5p~| gga-mir-490| sense

chr1:59948755-59948776|-

13.8 ± 2.1

228.3 ± 47.4

17

miRNA| ENSGALT00000042432| 3p~| sense

chr1:104486649-104486675|-

8.2 ± 4.6

84.6 ± 5.7

10

miRNA| ENSGALT00000029028| 3p| gga-mir-133b| sense #

chr3:110384948-110384968|-

93 ± 21.6

866.5 ± 52.1

9.3

miRNA| ENSGALT00000042246| 3p~| gga-mir-1731| sense

chr12:10938277-10938299|-

1.7 ± 1.1

15 ± 1.6

8.8

miRNA| ENSGALT00000042411| 5p| gga-mir-1434| sense

chr28:1055205-1055224|+

26.5 ± 11.3

204.5 ± 18.6

7.7

miRNA| ENSGALT00000035271| 3p| gga-mir-193b| sense

chr14:759503-759526|+

31.8 ± 0.3

213.2 ± 26

6.7

miRNA| ENSGALT00000042289| 5p| gga-mir-1747| sense

chr2:62758752-62758773|-

2.1 ± 1.2

12.5 ± 0.6

6.1

miRNA| ENSGALT00000028974| 5p| gga-mir-146a| sense

chr13:7555655-7555676|-

10.6 ± 4.2

60.6 ± 8.3

5.7

miRNA| ENSGALT00000028997| 5p| gga-mir-30d| sense #

chr2:148337300-148337321|-

1452 ± 39.6

7275.3 ± 46.5

5.0

miRNA| ENSGALT00000042432| 5p|| sense

chr1:104486710-104486736|-

915.9 ± 102.7

3702.3 ± 152.3

4.0

miRNA| ENSGALT00000028990| 3p~| gga-mir-138-1| sense

chr2:40745167-40745183|-

9.4 ± 2.4

33.5 ± 1

3.6

miRNA| ENSGALT00000028998| 5p| gga-mir-30b| sense

chr2:148331648-148331669|-

461.2 ± 63

1638.4 ± 129.7

3.6

miRNA| ENSGALT00000029030| 3p| gga-mir-223| sense

chr4:233007-233027|+

2759.8 ± 88

9608.1 ± 564.1

3.5

miRNA| ENSGALT00000042472| 5p| gga-mir-1677| sense #

chr3:76659772-76659792|+

219.8 ± 31.9

725.3 ± 80.2

3.3

miRNA| ENSGALT00000028951| 5p| gga-mir-125b| sense #

chr1:102457663-102457684|+

5255.7 ± 209.1

15151.5 ± 1241

2.9

miRNA| ENSGALT00000035272| 3p| gga-mir-181a-1| sense

chr8:2001620-2001641|+

154.6 ± 49.6

424.6 ± 8.1

2.7

miRNA| ENSGALT00000029026| 5p| gga-mir-30a| sense #

chr3:85102244-85102265|+

898.4 ± 20.4

2238.4 ± 52.7

2.5

miRNA| ENSGALT00000035333| 3p| gga-mir-144| sense

chr19:5824134-5824155|-

79.4 ± 4.2

187.5 ± 8.9

2.4

miRNA| ENSGALT00000029015| 5p| gga-let-7k| sense

chr26:1442955-1442976|-

11.8 ± 1

25.5 ± 3.8

2.2

miRNA| ENSGALT00000028983| 5p| gga-mir-126| sense #

chr17:8431792-8431812|-

1310.7 ± 123.6

2561 ± 161.5

2.0

miRNA| ENSGALT00000029008| 5p| gga-mir-30e| sense

chr23:5248432-5248450|+

1382.7 _ 30.5

2630.2 ± 3.1

1.9

miRNA| ENSGALT00000042329| 3p~| gga-mir-1811| sense

chr4:58651749-58651768|+

60.9 _ 6

105.5 ± 4

1.7

miRNA| ENSGALT00000028959| 3p~| gga-mir-18a| sense

chr1:152248637-152248658|-

49.1 _ 0.3

82.5 ± 2.8

1.7

  1. Table of significantly cardiac enriched miRNA transcripts. Indicated are transcript name (EnsemblTranscript | 5p/3p | miRNA name | (anti)sense), genomic location, average expression values ± SD and the fold difference between samples. The ' ~' indicates miRNA transcripts for which the genomic positions were not present in the Ensembl database and thus were inferred from the complementary position of the hairpin structure. # indicates the difference in expression level was confirmed by qPCR.
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BMC Genomics

ISSN: 1471-2164

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