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Table 1 Functional classification of differentially expressed genes associated with enriched GO terms1

From: Transcriptome analysis of grain-filling caryopses reveals involvement of multiple regulatory pathways in chalky grain formation in rice

GO components

 

Gene number3

P value2

Depth

A. Biological process

    

   lipid transport

GO:0006869

7

3.61E-07

3

   lipid localization

GO:0010876

7

3.61E-07

3

   response to stress

GO:0006950

12

2.33E-05

2

   carbohydrate metabolic process

GO:0005975

11

6.38E-04

3

   macromolecule localization

GO:0033036

7

1.91E-03

2

   regulation of transcription, DNA-dependent

GO:0006355

8

4.07E-03

5

   regulation of RNA metabolic process

GO:0051252

8

4.17E-03

4

   transcription, DNA-dependent

GO:0006351

8

5.69E-03

5

   RNA biosynthetic process

GO:0032774

8

5.69E-03

4

   primary metabolic process

GO:0044238

39

6.51E-03

2

B. Molecular function

    

   hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0004553

7

8.41E-04

4

   oxidoreductase activity

GO:0016491

20

4.41E-03

2

  1. 1Differentially expressed genes with fold change of > = 2 are classified here.
  2. 2P values were calculated using Fisher's exact test.
  3. 3Only groups with more than 5 genes/transcripts were listed here.