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Figure 3 | BMC Genomics

Figure 3

From: Smed454 dataset: unravelling the transcriptome of Schmidtea mediterranea

Figure 3

Distribution of different HSP types from 90e over genome sequences. The top table shows the total number of similarity hits, while the bottom table classifies the hits into different types of HSPs: A) 454 contigs not mapping to a genomic sequence; B) genomic contigs not mapping to a 454 contig; C and J) 454 contigs with an unmapped sequence on the left and right, respectively; D) missing sequence on 454 contigs corresponding to a putative gap in the assembly; E) contiguous HSPs on 454 contigs related to a genomic intron; F) co-linear unmapped sequences on both sequence sets; G) contiguous overlapping HSPs defining a larger similarity segment; H) unaligned genomic sequences between HSPs of two different 454 contigs, which can be interpreted as putative intergenic sequences; I) HSPs on 454 contigs supporting a pair of genomic contigs, which could then be merged into a larger genomic scaffold. All columns show HSP numbers--the '#HSPs' row--except for A and B, which correspond to number of sequences.

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