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Table 1 Summary of sequence statistics for each assembly.

From: Smed454 dataset: unravelling the transcriptome of Schmidtea mediterranea

SET Contigs Singletons TOTAL SEQs GC% LENGTHs
[min/median/max/avg]
90 52,885 137,213 190, 098 35.130 20 354 6812 355.78
95 52,501 137,077 189,578 --- --- --- --- ---
98 52,321 137,353 189,674 35.127 20 354 6812 355.82
90e 53,867 138,766 192,633 35.108 20 358 7918 364.81
  1. Set names are related to the corresponding homology level cutoff value (90e stands for 90% similarity including the set of NCBI Unigene ESTs). Contigs are the result of at least two sequencing reads, and singletons of only one read. GC content is the average value for all sequences. Sequence lengths are shown as minimum, median, maximum and average values in nucleotides for each set.