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Table 1 List of methylated proteins and methylation sites discovered by FindMod.

From: Identification of arginine- and lysine-methylation in the proteome of Saccharomyces cerevisiae and its functional implications

Gene name Swiss-Prot accession Description Methylated residuesa
ARC40 P38328 Actin-related protein 2/3 complex subunit 1 mK121
ATP2 P00830 ATP synthase subunit beta, mitochondrial precursor mK196
CDC11 P32458 Cell division control protein 11 dR35
DIP2 Q12220 U3 small nucleolar RNA-associated protein 12 mK350
DNF1 P32660 Probable phospholipid-transporting ATPase DNF1 mK541
ECM29 P38737 Proteasome component ECM29 mR542, dR1112
EDE1 P34216 EH domain-containing and endocytosis protein 1 mR252
EMG1 Q06287 Essential for mitotic growth 1 mK147
ERB1 Q04660 Ribosome biogenesis protein ERB1 mK577, mK581
FKS1 P38631 1,3-beta-glucan synthase component FKS1 mR946, dR946, dR952, mR962, dR962, dR1527
GCD10 P41814 tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit TRM6 mK436, mR447
GCN1 P33892 Translational activator GCN1 dK1446
GCN20 P43535 Protein GCN20 dK656
GUS1 P46655 Glutamyl-tRNA synthetase, cytoplasmic mR371
HAS1 Q03532 ATP-dependent RNA helicase HAS1 dK444
IMD3 P50095 Probable inosine-5'-monophosphate dehydrogenase IMD3 mR168
ISW1 P38144 ISWI chromatin-remodeling complex ATPase ISW1 mK14
LEA1 Q08963 U2 small nuclear ribonucleoprotein A' dR141
MPG1 P41940 Mannose-1-phosphate guanyltransferase dK299
MRPL17 P36528 54S ribosomal protein L17, mitochondrial precursor mK70
MRPL20 P22354 54S ribosomal protein L20, mitochondrial precursor mK104
NIP1 P32497 Eukaryotic translation initiation factor 3 subunit C mK514
NOC2 P39744 Nucleolar complex protein 2 mK384
NOG2 P53742 Nucleolar GTP-binding protein 2 dR336
NOT1 P25655 General negative regulator of transcription subunit 1 mR256
POL12 P38121 DNA polymerase alpha subunit B mK84
PRP43 P53131 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 dK662
PRT1 P06103 Eukaryotic translation initiation factor 3 subunit B mR572
PSD2 P53037 Phosphatidylserine decarboxylase proenzyme 2 precursor mR252
PYK1 P00549 Pyruvate kinase 1 mR216, dR216
RPA2 P22138 DNA-directed RNA polymerase I subunit RPA2 dK513
RPB2 P08518 DNA-directed RNA polymerase II subunit RPB2 mR496
RPL16A P26784 60S ribosomal protein L16-A dK148
RPL18A, RPL18B P07279 60S ribosomal protein L18 mR105
RPL1A, RPL1B P53030 60S ribosomal protein L1 dK207
RPL20A, RPL20B P0C2I0 60S ribosomal protein L20 dK47
RPL27A, RPL27B P0C2H6, P0C2H7 60S ribosomal protein L27 dR15, dK133
RPL2A, RPL2B P05736 60S ribosomal protein L2 dR21
RPL3 P14126 60S ribosomal protein L3 mR275, dK384
RPL4A P10664 60S ribosomal protein L4-A dR84, mK104
RPL7A P05737 60S ribosomal protein L7-A mR218
RPL7B Q12213 60S ribosomal protein L7-B mR218
RPL8B P29453 60S ribosomal protein L8-B mK15, mK43, dK241
RPN2 P32565 26S proteasome regulatory subunit RPN2 mK376
RPS11A, RPS11B P26781 40S ribosomal protein S11 mR67
RPS13 P05756 40S ribosomal protein S13 mK140
RPS17A P02407 40S ribosomal protein S17-A dK59
RRP5 Q05022 rRNA biogenesis protein RRP5 dR215, dK769
RSC1 P53236 Chromatin structure-remodeling complex subunit RSC1 mR454
RSC30 P38781 Chromatin structure-remodeling complex protein RSC30 mR692
RVB2 Q12464 RuvB-like protein 2 mK412
SKI3 P17883 Superkiller protein 3 dK1088
SMB1 P40018 Small nuclear ribonucleoprotein-associated protein B mK138, mK145
SNF2 P22082 Transcription regulatory protein SNF2 dK1028
SNU114 P36048 114 kDa U5 small nuclear ribonucleoprotein component dK356, mK935
SSB1 P11484 Heat shock protein SSB1 dR513
SSB2 P40150 Heat shock protein SSB2 dR513
TDH3 P00359 Glyceraldehyde-3-phosphate dehydrogenase 3 dR11
TIF32 P38249 Eukaryotic translation initiation factor 3 subunit A dK192
TUB2 P02557 Tubulin beta chain dR318
URA7 P28274 CTP synthase 1 dK28
USO1 P25386 Intracellular protein transport protein USO1 mK119
UTP22 P53254 U3 small nucleolar RNA-associated protein 22 mK1158
VPS52 P39904 Vacuolar protein sorting-associated protein 52 mR224
YKU70 P32807 ATP-dependent DNA helicase II subunit 1 dR549
YPR097W Q06839 PX domain-containing protein YPR097W dK249
  1. a: m, monomethylated; d, dimethylated