Skip to main content

Table 1 Taxonomic distribution of genomes encoding BspA-like proteins

From: Trichomonas vaginalis vast BspA-like gene family: evidence for functional diversity from structural organisation and transcriptomics

Taxaa

Best Bit score

No. hitb

Higher taxon

Habitatc

Eukaryota

    

Trichomonas vaginalis G3

774

595 (908)

Parabasala

Urogenital (human)

Entamoeba dispar SAW760

205

34 (298)

Amoebozoa

Intestinal (human)

Entamoeba histolytica HM-1:IMSS

143

27 (124)

Amoebozoa

Intestinal (human)

Archaea

    

Methanosarcina barkeri str Fusaro

251

2 (2)

Euryarchaeotes

Aquatic & rumen

Methanosarcina acetivorans C2A

244

3 (3)

Euryarchaeotes

Aquatic & rumen

Methanococcus vannielii SB

126

1 (2)

Euryarchaeotes

Aquatic

Methanococcus maripaludis C7

100

2 (2)

Euryarchaeotes

Aquatic

Bacteria

    

Eubacterium siraeum DSM 15702

249

7 (7)

Firmicutes

Intestine (human, HMP)

Flavobacterium psychrophilum JIP02/86

236

15 (15)

CFB groupd

Fish pathogen

Clostridium leptum DSM 753

229

1 (1)

Firmicutes

Intestine (human, HMP)

bacterium Ellin514

199

2 (2)

Verrucomicrobia

Soil

Syntrophomonas wolfei e

193

1 (1)

Firmicutes

Aquatic & rumen

Clostridium spiroforme DSM 1552

178

1 (1)

Firmicutes

Intestine (human, HMP)

Clostridium beijerinckii NCIMB 8052

174

5 (5)

Firmicutes

Intestine, aquatic

Epulopiscium sp 'N.t morphotype B'

174

19 (19)

Firmicutes

Intestine (fish)

Victivallis vadensis ATCC BAA-548

167

3 (3)

Verrucomicrobia

Intestine (human)

Shewanella pealeana ATCC 700345

155

3 (3)

γ-proteobacteria

Nidamental glands (squid)

Anaerofustis stercorihominis DSM 17244

153

12 (15)

Firmicutes

Intestine (human, HMP)

Bacteroides fragilis NCTC 9343

148

2 (4)

CFB group

Intestine (human)

Treponema denticola ATCC 35405

146

5 (11)

Spirochetes

Oral cavity

Alistipes putredinis DSM 17216

146

6 (7)

CFB group

Intestine (human, HMP)

Synechococcus sp. WH 7805

141

2 (3)

Cyanobacteria

Marine & host associated

Ruminococcus torques ATCC 27756

138

4 (6)

Firmicutes

Intestine (human, HMP)

Bacteroides ovatus ATCC 8483

134

4 (5)

CFB group

Intestine (human, HMP)

Clostridium sp. L2-50

117

4 (10)

Firmicutes

Intestine (human, HMP)

Ruminococcus torques ATCC 27756

113

4 (6)

Firmicutes

Intestine (human, HMP)

Clostridium butyricum 5521

112

2 (2)

Firmicutes

Intestine (human)

Coprococcus eutactus ATCC 27759

107

3 (6)

Firmicutes

Intestine (human, HMP)

Photobacterium sp. SKA34

104

1 (1)

γ-proteobacteria

Aquatic, host associated

Kordia algicida OT-1

103

1 (1)

CFB group

Aquatic, algae pathogen

Bacteroides stercoris ATCC 43183

99

4 (6)

CFB group

Intestine (human, HMP)

Clostridium phytofermentans ISDg

99

4 (6)

Firmicutes

Soil

Clostridium bartlettii DSM 16795

96

2 (3)

Firmicutes

Intestine (human, HMP)

Desulfitobacterium hafniense Y51

91

1 (1)

Firmicutes

Soil

  1. aThe order of appearance of the three Domains of life is defined by the taxon with the highest PHI-Blast bit score. The taxa of a given Domain are then listed by decreasing bit score. Strains/isolates are indicated.
  2. bTaxa with bit score ≥ 90 in the initial PHI-Blast (see Methods section) are listed here. additional file 2, Table S2 has the complete taxa and sequences accessions list. The listed eukaryotes and Archaea were the only taxa recovered in the search. The numbers in brackets are the corresponding numbers of hits from a PSI-Blast search - two iterations with e-score ≤ 1e-5 following the aforementioned PHI-Blast search. The complete list of taxa and sequences accessions for the PSI-Blast search are in additional file 3, Tables S3 (Trichomonas and Entamoeba) and additional file 9, Table S6 (Bacteria and Archaea).
  3. cTaxa isolated from human tissues might be present in other mammalian species as well. HMP: indicates species being sequenced in the context of the Human Microbiome Project [101].
  4. dCFB, Cytophagales/Green sulfur bacteria group syn. Bacteroidetes/Chlorobi group.
  5. eComplete denominations: Syntrophomonas wolfei subsp wolfei str Goettingen
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us