Table 6 The no. of predicted true DEGs using partial samples from condition A and B with or without using DB Pruning. Rp’, Wad’, tTest’, FC’ are algorithms with DB pruning. The total number of true DEGs of the 17 datasets is 284.
From: Density based pruning for identification of differentially expressed genes from microarray data
| Â | Â | K=150 | K=250 | K=350 | K=450 | K=550 |
|---|---|---|---|---|---|---|
2x2 samples | Rp/Rp’ | 45/46 | 61/61 | 68/71 | 78/79 | 86/92 |
|  | Fc/Fc’ | 43/44 | 58/62 | 62/71 | 69/82 | 74/89 |
|  | tTest/tTest’ | 16/32 | 24/47 | 31/60 | 37/77 | 45/88 |
|  | Wad/Wad’ | 92/92 | 116/116 | 127/128 | 140/141 | 149/149 |
3x3 samples | Rp/Rp’ | 52/53 | 60/64 | 71/75 | 76/81 | 81/90 |
|  | Fc/Fc’ | 54/54 | 61/63 | 71/77 | 79/87 | 90/100 |
|  | tTest/tTest’ | 32/52 | 48/76 | 62/98 | 72/115 | 82/132 |
|  | Wad/Wad’ | 91/91 | 128/129 | 150/150 | 166/166 | 171/175 |
4x4 samples | Rp/Rp’ | 60/63 | 70/74 | 78/86 | 85/97 | 97/105 |
|  | Fc/Fc’ | 62/63 | 74/81 | 86/92 | 94/108 | 115/128 |
|  | tTest/tTest’ | 67/85 | 83/111 | 100/141 | 108/157 | 119/174 |
|  | Wad/Wad’ | 119/119 | 155/155 | 173/174 | 189/190 | 193/196 |