Skip to main content

Table 3 Distribution of EPIYA-motif containing proteins at genus and species levels (as of July 6th 2009)

From: Effector prediction in host-pathogen interaction based on a Markov model of a ubiquitous EPIYA motif

Groups Number of genuses Number of species
  total With copies of motif≥1 (%) With copies of motif≥2 (%) total With copies of motif≥1 (%) With copies of motif≥2 (%)
Archaea 109 49 44.95% 19 17.43% 330 90 27.27% 28 8.48%
Viruses 623 221 35.47% 18 2.89% 6443 433 6.72% 30 0.47%
Bacteria 1198 560 46.74% 209 17.45% 6291 1398 22.22% 360 5.72%
Eukaryota 35499 1828 5.15% 122 0.34% 108654 2725 2.51% 169 0.16%
-Protista 1263 109 8.63% 18 1.43% 3747 186 4.96% 32 0.85%
-Fungi 1509 121 8.02% 40 2.65% 5772 206 3.57% 52 0.90%
-Metazoa 22309 662 2.97% 49 0.22% 62097 826 1.33% 68 0.11%
-Viridiplantae 10418 936 8.98% 15 0.14% 37038 1507 4.07% 17 0.05%
total 37429 2658 7.10% 368 0.98% 121718 4646 3.82% 587 0.48%
  1. Data in this table presents the numbers of genuses/species with proteins containing the EPIYA motif versus total number of genuses/species in NR. The Eukaryota group is divided into protista, fungi, metzoa and viridiplantae.