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Table 1 Comparison of ADHOC to Competing Clustering Methods for DIP Yeast PPI Dataset

From: Exploring hierarchical and overlapping modular structure in the yeast protein interaction network

Method Cluster Number Cluster Size Discard (%) GO (-log P-value)
     MF BP CC
ADHOC 50 20.56 68.05 5.18 7.44 6.38
Maximal Clique 376 4.55 80.06 3.43 4.02 2.67
IPCA 253 4.64 80.39 3.61 4.09 2.89
DPClus 90 5.27 84.49 3.91 4.50 3.44
MCODE 29 23.76 75.21 4.20 5.23 4.89
CFinder 84 7.46 80.06 4.63 6.03 4.66
  1. Cluster Number: the number of clusters identified by each method; Cluster Size: the average number of proteins in each cluster; Discard (%): the percentage of proteins not assigned to any cluster; GO: the average -log p-values (adjusted) of all detected clusters for Gene Ontology (molecular functions (MF), biological process (BP), and cellular component (CC)).