Skip to main content
Figure 2 | BMC Genomics

Figure 2

From: Improving protein secondary structure prediction based on short subsequences with local structure similarity

Figure 2

The procedure used to extract protein words and synonymous words for a query protein p . The procedure used to extract protein words and their synonymous words for a given query protein p (assuming the window size n is 4). We use a sliding window to screen the query sequence and all the similar protein sequences found by PSI-BLAST and extract all words. Each word is associated with a piece of structural information of the region from which it is extracted. The protein source of all the extracted words is the query protein p, since all the structural information is derived from p.

Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us