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Table 3 Search for AS variants by comparison with sequences from public databases.

From: Alternative splicing enriched cDNA libraries identify breast cancer-associated transcripts

 

Presence of alternatively spliced transcripts in databases

No alternatively spliced transcripts in databases

Lib_1

ATP1A1*

CDC42SE1

 

ATP5A1

CDK5RAP2*

 

C6orf108

DDB2

 

CAMK2G

EEF2

 

CD320

FARS2

 

CTSH

GABARAP

 

ELF3

GNB3

 

FLNA*

GRK6

 

GAPDH

HDAC2

 

GNAS

ITGB5*

 

GNPTAB

MAN2A1

 

MAN1B1

OSBPL8

 

NAP1L1

PSMD6

 

PPIB

PTPRA

 

RANBP1

188268

 

RPL28

RBM10*

 

RPL6

RNF149

 

RPS4X

ROCK2

 

SETD2

RPL11

 

SFRS9*

THSD1

 

STK25

 
 

UQCRC1

 

Lib_2

ALDH3A2*

ACLY

 

AOF2*

ASCC3L1

 

CCNB1

C7orf55

 

CREB3

COL7A1*

 

DNAJC10

DDEF1

 

FN1*

DENND4C

 

INTS9

GDF9

 

MYO1C

KIAA0090

 

RPS2*

KIAA0152

 

RPS5

MRPL45

 

SEC61G

PHF19

 

ST13

PTPLA*

  

RBMX

  

SGSM2

  

SLC4A2

  

TRIP6*

  

XPO1

Lib_1 & Lib_2

CLTC*

ATXN10

 

EIF4A3*

INPP1

 

GSPT1*

PAIP1

 

KRT18*

 
 

PSMC2*

 
  1. *ASSETs selected for RT-PCR validation