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Table 3 Spearman's rank correlation (r) of the marker order for the comparison among the three population-specific B. napus maps, BnaSNDH_05_2010a, BnaSGDH_03_2010a and BnaDYDH_05_2010a, comparison between each of the three population-specific maps and each of the two integrated maps, BnaWAIT_01_2010a generated by JoinMap and BnaWAIT_01_2010b generated by MergeMap and comparison between the two integrated maps, BnaWAIT_01_2010a and BnaWAIT_01_2010b.

From: Integration of linkage maps for the Amphidiploid Brassica napus and comparative mapping with Arabidopsis and Brassica rapa

LG Map BnaSNDH_05_2010a BnaSGDH_03_2010a BnaDYDH_05_2010a BnaWAIT_01_2010a
A01 BnaSGDH_03_2010a 0.96****    
  BnaDYDH_05_2010a 0.97*** 0.97***   
  BnaWAIT_01_2010a 0.97**** 0.98**** 0.99****  
  BnaWAIT_01_2010b 0.99**** 1.00**** 1.00**** 0.97***
A02 BnaSGDH_03_2010a 0.95****    
  BnaDYDH_05_2010a 0.94* 1.00   
  BnaWAIT_01_2010a 0.99**** 0.99**** 1.00****  
  BnaWAIT_01_2010b 1.00**** 0.99**** 1.00**** 0.99****
A03 BnaSGDH_03_2010a 0.99****    
  BnaDYDH_05_2010a 0.97*** 0.96**   
  BnaWAIT_01_2010a 1.00**** 0.99**** 1.00****  
  BnaWAIT_01_2010b 1.00**** 1.00**** 0.98**** 0.99****
A04 BnaSGDH_03_2010a 0.93****    
  BnaDYDH_05_2010a ------------- 0.20   
  BnaWAIT_01_2010a 0.99**** 0.97**** 0.86****  
  BnaWAIT_01_2010b 1.00**** 1.00**** 0.98**** 0.95****
A05 BnaSGDH_03_2010a 0.90****    
  BnaDYDH_05_2010a 0.20 1.00   
  BnaWAIT_01_2010a 0.94**** 0.97**** 1.00****  
  BnaWAIT_01_2010b 1.00**** 0.99**** 1.00**** 0.96****
A06 BnaSGDH_03_2010a 0.84****    
  BnaDYDH_05_2010a 1.00 1.00   
  BnaWAIT_01_2010a 0.96**** 0.94**** 1.00****  
  BnaWAIT_01_2010b 0.97**** 0.98**** 1.00**** 0.95****
A07 BnaSGDH_03_2010a 0.54    
  BnaDYDH_05_2010a 1.00 -0.80   
  BnaWAIT_01_2010a 0.87**** 0.76**** 1.00****  
  BnaWAIT_01_2010b 1.00**** 0.98**** 0.98**** 0.85****
A08 BnaSGDH_03_2010a 0.98****    
  BnaDYDH_05_2010a 0.70 0.80   
  BnaWAIT_01_2010a 0.79**** 0.46**** 0.58****  
  BnaWAIT_01_2010b 1.00**** 0.98**** 0.98**** 0.64****
A09 BnaSGDH_03_2010a 0.75****    
  BnaDYDH_05_2010a 0.95*** 0.93**   
  BnaWAIT_01_2010a 0.86**** 0.91**** 0.97****  
  BnaWAIT_01_2010b 0.96**** 0.99**** 1.00**** 0.92****
A10 BnaSGDH_03_2010a 0.97****    
  BnaDYDH_05_2010a 0.93** 0.90   
  BnaWAIT_01_2010a 0.99**** 0.99**** 0.92****  
  BnaWAIT_01_2010b 1.00**** 1.00**** 0.98**** 0.97****
C01 BnaSGDH_03_2010a 0.97****    
  BnaDYDH_05_2010a 1.00 0.93**   
  BnaWAIT_01_2010a 0.99**** 0.96**** 0.97****  
  BnaWAIT_01_2010b 1.00**** 0.99**** 1.00**** 0.97****
C02 BnaSGDH_03_2010a 0.64*    
  BnaDYDH_05_2010a 0.70 1.00   
  BnaWAIT_01_2010a 0.99**** 0.88**** 0.99****  
  BnaWAIT_01_2010b 1.00**** 0.99**** 1.00**** 0.96****
C03 BnaSGDH_03_2010a 0.91****    
  BnaDYDH_05_2010a 0.66 0.93****   
  BnaWAIT_01_2010a 0.96**** 0.96**** 0.95****  
  BnaWAIT_01_2010b 0.98**** 1.00**** 1.00**** 0.96****
C04 BnaSGDH_03_2010a 0.86****    
  BnaDYDH_05_2010a 1.00 0.96**   
  BnaWAIT_01_2010a 0.89**** 0.96**** 0.99****  
  BnaWAIT_01_2010b 0.99**** 0.98**** 1.00**** 0.92****
C05 BnaSGDH_03_2010a 0.95****    
  BnaDYDH_05_2010a 0.70 1.00***   
  BnaWAIT_01_2010a 0.99**** 0.98**** 0.47***  
  BnaWAIT_01_2010b 1.00**** 1.00**** 1.00**** 0.81****
C06 BnaSGDH_03_2010a 0.69*    
  BnaDYDH_05_2010a 1.00 1.00   
  BnaWAIT_01_2010a 0.63**** 0.82**** 1.00****  
  BnaWAIT_01_2010b 0.97**** 0.97**** 1.00**** 0.72****
C07 BnaSGDH_03_2010a 0.91****    
  BnaDYDH_05_2010a 1.00 0.78**   
  BnaWAIT_01_2010a 0.99**** 0.99**** 0.99****  
  BnaWAIT_01_2010b 1.00**** 0.98**** 1.00**** 0.99****
C08 BnaSGDH_03_2010a 0.96****    
  BnaDYDH_05_2010a 1.00 0.70   
  BnaWAIT_01_2010a 0.92**** 0.96**** 1.00****  
  BnaWAIT_01_2010b 1.00**** 1.00**** 1.00**** 0.94****
C09 BnaSGDH_03_2010a 0.94****    
  BnaDYDH_05_2010a 1.00 1.00   
  BnaWAIT_01_2010a 0.99**** 0.99**** 0.98****  
  BnaWAIT_01_2010b 0.99**** 1.00**** 1.00**** 0.99****
  1. The level of significance is shown by asterisks. Significance is shown as: * < 0.05; ** < 0.01; *** < 0.001; **** < 0.0001.