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Table 3 Simple Sequence repeats (SSRs) statistics

From: Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)

di-nucleotide repeat Number of di-SSRs %
AG 225 76
AT 60 20
AC 11 4
Total 296 100
tri-nucleotide repeat Number of tri-SSRs  
AAG 699 50
AGC 135 10
ATC 116 8
AGG 99 7
AAT 89 6
Other tri-nucleotide repeats   
(% ≤ 6 each one)   
AAC, ACC, ACG,CCG, ACT 249 19
Total 1387 100
Tetra-nucleotide repeat Number of tetra-SSRs %
AAAT 33 13
AAAG 31 12
AATG 24 10
AATC 21 8
ATCC 18 7
AAAC 17 7
ACAT 16 6
Other tetranucleotide repeats   
(% ≤ 6 each one)   
ACTC,AACC,AAGG,ACAG,AGGC,AACG,AACT, 92 37
AATT,AGCC,AGCG,AAGC,AGGG,AGAT,ACGG, AGCT,AAGT,ACCC, ACCT   
Total 252 100
  1. The number of di-, tri- and tetra-nucleotide repeats identified in the Cucurbita unigene dataset is shown for the complete set of putative SSRs.
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