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Table 4 Localization of SSRS with respect to putative initiation and termination codons in the Cucurbita unigene dataset

From: Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)

 

di-SSRs

tri-SSRs

tetra-SSRs

all-SSRs

 

N°

%

N°

%

N°

%

N°

%

5'-UTR

86

29%

172

12%

102

41%

360

19%

ORF

72

24%

903

65%

89

35%

1064

55%

3'-UTR

105

36%

194

14%

30

12%

329

17%

Other

33

11%

118

9%

31

12%

182

9%

Total

296

100%

1387

100%

252

100%

1935

100%

  1. Unigenes were checked for the presence of the start and stop codons. "Other" means imprecise localization of the SSRs with respect to putative initiation or termination codons.
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BMC Genomics

ISSN: 1471-2164

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