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Table 4 Localization of SSRS with respect to putative initiation and termination codons in the Cucurbita unigene dataset

From: Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)

  di-SSRs tri-SSRs tetra-SSRs all-SSRs
  % % % %
5'-UTR 86 29% 172 12% 102 41% 360 19%
ORF 72 24% 903 65% 89 35% 1064 55%
3'-UTR 105 36% 194 14% 30 12% 329 17%
Other 33 11% 118 9% 31 12% 182 9%
Total 296 100% 1387 100% 252 100% 1935 100%
  1. Unigenes were checked for the presence of the start and stop codons. "Other" means imprecise localization of the SSRs with respect to putative initiation or termination codons.