From: Characterization of statistical features for plant microRNA prediction

Feature | Original parameters of miRDeep | Plant specific (monocot) | Dicot specific (if any) | |
---|---|---|---|---|

MFE
| Known |
Cumulative Distribution Function: $F(x)={e}^{-{e}^{(x-location)/scale}}$ Location = 32; Scale = 5.5 | Log-odds score: $f(x)=\frac{a}{(b+{e}^{x*c})}$ | Log-odds score:$f(x)=\frac{a}{(b+{e}^{x*c})}$ |

Background |
Cumulative Distribution Function: $F(x)={e}^{-{e}^{(x-location)/scale}}$ Location = 23; Scale = 4.8 |
a = 1.339e-12 b = 2.778e-13 c = 45.843 |
a = 4.46e-4 b = 9.125e-5 c = 26.929 | |

Stability (log-odds)
| Stable | 1.6 | 1.37 | 0.63 |

Unstable | -2.2 | -3.624 | -3.17 | |

Nucleus conservation (log-odds)
| Conserved | 3 | 7.63 | |

Non-conserved | -0.6 | -1.17 | ||

Excision length
| 140 nt | 300 nt | ||

Paired
| Total | ≥14 | ≥15 nt | |

Unpaired
| Total | NA | ≤5 nt | |

Consecutive unpaired | NA | ≤3 nt | ||

Bulge
| Total |
could be as high as 5 nt ^{#}
| ≤2 nt | |

Maximum multiple hits of deep-seq read
| 5 | 20 |