From: Characterization of statistical features for plant microRNA prediction
Feature | Â | Original parameters of miRDeep | Plant specific (monocot) | Dicot specific (if any) |
---|---|---|---|---|
MFE | Known | Cumulative Distribution Function: Location = 32; Scale = 5.5 | Log-odds score: | Log-odds score: |
 | Background | Cumulative Distribution Function: Location = 23; Scale = 4.8 | a = 1.339e-12 b = 2.778e-13 c = 45.843 | a = 4.46e-4 b = 9.125e-5 c = 26.929 |
Stability (log-odds) | Stable | 1.6 | 1.37 | 0.63 |
 | Unstable | -2.2 | -3.624 | -3.17 |
Nucleus conservation (log-odds) | Conserved | 3 | 7.63 | Â |
 | Non-conserved | -0.6 | -1.17 |  |
Excision length | Â | 140 nt | 300 nt | Â |
Paired | Total | ≥14 | ≥15 nt |  |
Unpaired | Total | NA | ≤5 nt |  |
 | Consecutive unpaired | NA | ≤3 nt |  |
Bulge | Total | could be as high as 5 nt # | ≤2 nt |  |
Maximum multiple hits of deep-seq read | Â | 5 | 20 | Â |