Skip to main content

Table 3 Enriched GO terms in biological processes for SOX2 DEGs

From: The SOX2 response program in glioblastoma multiforme: an integrated ChIP-seq, expression microarray, and microRNA analysis

GO CATEGORY

TOTAL GENES

CHANGED GENES

ENRICHMENT

LOG10(p)

FALSE DISCOVERY RATE

GO:0030935_sheet-forming_collagen

5

4

30.33

-5.64

0.00

GO:0042035_regulation_of_cytokine_biosynthetic_process

43

7

6.17

-3.93

0.04

GO:0005576_extracellular_region

561

30

2.03

-3.77

0.04

GO:0042107_cytokine_metabolic_process

48

7

5.53

-3.62

0.05

GO:0002376_immune_system_process

473

26

2.08

-3.51

0.05

GO:0042089_cytokine_biosynthetic_process

47

7

5.65

-3.68

0.05

GO:0044421_extracellular_region_part

392

24

2.32

-3.98

0.06

GO:0006952_defense_response

320

20

2.37

-3.51

0.06

GO:0005581_collagen

24

5

7.90

-3.46

0.07

GO:0042108_positive_regulation_of_cytokine_biosynthetic_process

29

5

6.54

-3.06

0.07

GO:0042226_interleukin-6_biosynthetic_process

8

3

14.22

-3.04

0.08

GO:0045408_regulation_of_interleukin-6_biosynthetic_process

8

3

14.22

-3.04

0.08

GO:0001525_angiogenesis

59

7

4.50

-3.06

0.08

GO:0005796_Golgi_lumen

7

3

16.25

-3.23

0.08

GO:0050926_regulation_of_positive_chemotaxis

7

3

16.25

-3.23

0.08

GO:0050927_positive_regulation_of_positive_chemotaxis

7

3

16.25

-3.23

0.08

GO:0032635_interleukin-6_production

17

4

8.92

-3.07

0.08

GO:0032675_regulation_of_interleukin-6_production

17

4

8.92

-3.07

0.08

GO:0042445_hormone_metabolic_process

57

7

4.66

-3.15

0.08

GO:0044420_extracellular_matrix_part

46

6

4.95

-2.91

0.08

GO:0032101_regulation_of_response_to_external_stimulus

62

7

4.28

-2.93

0.09

GO:0051093_negative_regulation_of_developmental_process

271

17

2.38

-3.08

0.09

GO:0050918_positive_chemotaxis

9

3

12.64

-2.87

0.09

GO:0009605_response_to_external_stimulus

415

22

2.01

-2.84

0.09