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Table 2 In silico prediction of Nkx3.1 binding sites in 129S7 Itln promoters.

From: Strain-specific copy number variation in the intelectin locus on the 129 mouse chromosome 1

Itln

Model

Score

Relative score

Start

End

site sequence

Itln1

NKX3-1

8.333

0.883282576

-1357

-1351

TAAGTGT

Itln2

NKX3-1

5.085

0.766546505

-1379

-1373

TAAATGT

Itln6

NKX3-1

5.085

0.766546505

-3747

-3741

TAAATGT

  1. JASPAR scan for the conserved Nkx3.1 motif in the 5 kbp upstream (represented by the negative positions) promoter regions.