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Table 2 Relevant biological functions identified from the annotation analysis

From: Identification of differentially expressed genes in chickens differing in muscle glycogen content and meat quality

Category

P-value

Molecules

Lipid Metabolism

9.42E-05-2.56E-02

ABCA12, ABCA2, ABHD5, ACSBG2, ACSL1, ADF,ADIPOR2, ALDH1A1, AOX1,CD38, CEBPB,CETP, CTSS, DCI,DRD3,GOT2, GRB10,HMGCL, HTT,INSIG1, LASS4, LPAR1,LPIN1,MTMR6, MTMR7,PCTP, PDK4,PHYH, PIK3CD,PLA2G7, PNPLA2, PRKAG2, PSAP,RAB5A,SGPL1, SLC27A1,UCP3

Molecular Transport

9.42E-05-1.93E-02

ABCA12, ABCA2, ABHD5, ACSL1, ADFP, ADIPOR2,ALDH1A1, ARNTL,CD38, CEBPB,CETP, CTSS, DCI,DRD3, F3, GHR,GOT2,HCK, HTT,INSIG1, LASS4, LPAR1,LPIN1, NEB, P2RY2,PCTP, PIK3CD, PLN, PNPLA2, PSAP,SGK1, SLC27A1,TGFB2, TGFB3,TRPC3, UCN3, UCP3, UGP2,VWF

Small Molecule Biochemistry

9.42E-05-2.6E-02

ABCA12,ABCA2, ABHD5, ACSBG2, ACSL1,ADAM10,ADFP,ADIPOR2,ALDH1A1, ALDH6A1, AOX1,CD38, CEBPB,CETP, CTSS, DCI, DRD3,FOXO3, GHR,GLS,GOT2, GRB10,HMGCL,HTT,INSIG1, LASS4, LPAR1,MTMR6,MTMR7, NUDT3,PCTP, PDK4, PIK3CD,PLA2G7, PNPLA2,LPIN1, PHYH, PRKAG2,PRPS1, PRPS2, PSAP,RAB5A, RPIA,SGPL1, SLC27A1, TGFB2,TGFB3, UCN3, UCP3,UGDH,UGP2

Carbohydrate Metabolism

3.36E-04-2.6E-02

ABHD5, ADAM10, ADIPOR2,ALDH2, CEBPB,CETP, FOXO3, GHR, HTT,IMPA2,MTMR6, MTMR7,PCTP, PDK4, PIK3CD,PLA2G7, PRKAG2, PSAP,RAB5A, RPIA,SOCS3, TGFB2, TGFB3,UCN3, UCP3,UGDH, UGP2

Cell Death

3.36E-04 - 2.64E-02

ALDH1A1, ATPA1, BAG3, CD99, CDK2AP1, CEBPB, CTSS, DAPK1, DCN, FGF1, FGFR2, FOXO3, GHR, HTT, IL15, MCL1, NEFH, PAX5, PKN2, RGS4, SGK1, SGPL1, SIAH1, SPARC, SRF, TGFB2, TGFB3, TPM3

  1. The biological interpretation of expressional data was performed using Ingenuity Pathway Analysis 7.0 (IPA, Ingenuity Systems Inc., Redwood City, CA). The genes included in the analysis were shown to be differential between F and L and/or between G+ and G- by either microarray or real-time RT-PCR. Genes are presented in alphabetical order for each category. The genes over expressed in muscles with high (F or G+) and low glycogen content (L and G-) are in bold and normal characters, respectively. Genes in italic were differentially regulated between models (F vs. L or G+ vs. G-).