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Table 5 Five known copy number differences detected between parental strains using WGS read depth.

From: High-throughput 454 resequencing for allele discovery and recombination mapping in Plasmodium falciparum

Chromosome Type No. of 2.5 kb windows Significant windows (p < 0.001) Highest Chi-square value
2 Deletion - in both 15 0 3.99
5 Amplification - 7C126 33 33 1212
9 Deletion - in both 52 13 50.6
12 Amplification - 7C126 1 1 85.44
12 Amplification - SC05 64 63 356.03
  1. Read alignment density was consistent with the known CNV alleles except for chromosome 9, where smaller insertions and deletions are detected within a larger shared allele.