From: Discovery of barley miRNAs through deep sequencing of short reads
Read name | Proposed miRBase name | Read sequence | Read Length | Abundance | putative miRNA* name | putative miRNA* sequence | putative miRNA* Length | putative miRNA* abundance | Confidence |
---|---|---|---|---|---|---|---|---|---|
GPB235 | Â | AUAAAACCUUCAGCUAUCC AUC | 22 | 4601 | GPB7393 | UUUGAUAUGUAAGUGGAUAGUU | 22 | 431 | *** |
GPB125 | miR5048 | UAUUUGCAGGUUUUAGGU CUAA | 22 | 12068 | GPB971 | AGACCUAGACAUGCAAGUAUA | 21 | 1201 | *** |
GPB1131 | miR5049 | UCCUAAAUACUUGUUGUU GGG | 21 | 803 | GPB31055 | AACAACAAGUAUUAUGGUACA | 21 | 16 | *** |
P51WP1692 | miR408b | CAGGGAUGGAGCAGAGCAAGG | 21 | 225 | P51WP9508 | UGCACUGCCUCUUCCCUGGC | 20 | 48 | *** |
GPB8582 | miR5050 | UUGAGGUCGUUCAACCAGCAA | 21 | 78 | P45NP15695 | CAGCACUAGCAAGUUGGUCGACCU | 24 | 34 | *** |
GPB86 | miR5071 | UCAAGCAUCAUAUCAUGGACC | 21 | 19176 | Â | Â | Â | Â | ** |
GPA5819 | miR5072 | CGUUCCCCAGCGGAGUCGCCA | 21 | 147 | Â | Â | Â | Â | ** |
GPB2903 | miR5054 | UCCCCACGGACGGCGCCA | 18 | 352 | Â | Â | Â | Â | ** |
GPA3884 | miR5055 | UCUCGCUACUGAGCUCGGCAU | 21 | 157 | Â | Â | Â | Â | ** |
P45NP9164 | miR5056 | AGGAAGAACCGGUAAUAAGCA | 21 | 72 | Â | Â | Â | Â | ** |
P45NP15764 | miR5073 | GUUUGGUGAAUCGGAAACAAUUU | 23 | 28 | Â | Â | Â | Â | ** |
GPB4154 | miR5057 | AAAUUUCAGAUCAUUUGGACA | 21 | 178 | Â | Â | Â | Â | ** |
TF6215B7984 | miR5058 | AAUAGUUGAGGGAUGGAAAACA | 22 | 68 | Â | Â | Â | Â | ** |
TF6215B74145 | miR5086 | ACAUUGGUGGAAGGCGUGGUA | 21 | 20 | Â | Â | Â | Â | ** |
TF6215B6553 | miR5074 | GAAGGCCACCGUCGGCACCGC | 21 | 142 | Â | Â | Â | Â | ** |
P51WP57134 | miR5059 | CGUGCCUGGGCAGCACCACCA | 21 | 16 | Â | Â | Â | Â | ** |
P51WP4847 | miR5075 | UUCUCCGUCGACGCCAUCCGC | 21 | 205 | Â | Â | Â | Â | ** |
P51WP10727 | miR5060 | CGGCAAGCUAGAGACCGCCAC | 21 | 68 | Â | Â | Â | Â | ** |
P45NP51144 | miR5061 | UCUGUUCUGUUCUGAUCGGUA | 21 | 24 | Â | Â | Â | Â | ** |
P45NP40836 | miR5051 | UUUGGCACCUUGAAACUGGGA | 21 | 21 | Â | Â | Â | Â | ** |
P45NP31207 | miR5076 | UAAAUGGGAGCAGAGCAGGUUU | 22 | 16 | Â | Â | Â | Â | ** |
P45NP21816 | Â | UGAGCUACAAAAGGAUUCGUU | 21 | 25 | Â | Â | Â | Â | ** |
P45NP16270 | miR1878 | AUUUGUAGUGUUCGGAUUGAGUUU | 24 | 33 | Â | Â | Â | Â | ** |
GPB49459 | miR5084 | AUACAGUACUGCAGAGGAUCCUAA | 24 | 16 | Â | Â | Â | Â | ** |
GPB41819 | miR5085 | AAGGACAUUUUUUGUGGCAUG | 21 | 47 | Â | Â | Â | Â | ** |
GPB2977 | miR5062a | UGAACCUUGGGGAAAAGCCGCAU | 23 | 99 | Â | Â | Â | Â | ** |
GPB5902 | miR5062b | UGAACCUUAGGGAACAGCCGCAU | 23 | 57 | Â | Â | Â | Â | ** |
GPB16764 | miR5063 | UCCACUGGAAGAGGCUUUUGCU | 22 | 54 | Â | Â | Â | Â | ** |
P51WP18432 | miR5052 | ACCGGCUGGACGGUAGGCAUA | 21 | 36 | Â | Â | Â | Â | * |
GPB1614 | miR5064 | UGAAUUUGUCCAUAGCAUCAG | 21 | 513 | Â | Â | Â | Â | * |
GPB25359 | miR5065 | UAGGCAAUUCACAUAUACACU | 21 | 27 | Â | Â | Â | Â | * |
GPB17570 | miR5066 | AAGUGUAUAUGUGGAUUGCCU | 21 | 73 | Â | Â | Â | Â | * |
GPB26526 | miR5053 | CGCAGCUGUAGUCGCCGGCGU | 21 | 22 | Â | Â | Â | Â | * |
GPB320 | miR5077 | GUUUCACGUCGGGUUCACCA | 20 | 5056 | Â | Â | Â | Â | * |
P45NP187203 | miR5078 | GGUCGUUCGACCGCGGCAUUU | 21 | 25 | Â | Â | Â | Â | * |
GPB373 | miR5067 | UGAGCGACAAGUAAUAUGGAU | 21 | 4043 | Â | Â | Â | Â | * |
P45NP20958 | miR5068 | AUCAGGUAGAUCGGGUAUGGGUAU | 24 | 40 | Â | Â | Â | Â | * |
P45NP15484 | miR5079 | UUUGGAUUUGUUAUUUUGGUAU | 22 | 68 | Â | Â | Â | Â | * |
GPB9781 | miR5080 | AAAAAGAUCAUACCGUGAGAG | 21 | 88 | Â | Â | Â | Â | * |
GPB37150 | miR5069 | UAGGUGAUUGAUUUGACUAAC | 21 | 17 | Â | Â | Â | Â | * |
GPA47901 | miR5081 | UAAUUUGUAGCAAAUUGGUGU | 21 | 16 | Â | Â | Â | Â | * |
GPA42571 | miR5082 | CGCGAUGAUGGCCGCGCGGGCUCA | 24 | 17 | Â | Â | Â | Â | * |
GPA18850 | miR5083 | AGACUACAAUUAUCUGAUCA | 20 | 28 | Â | Â | Â | Â | * |
GPA14470 | miR5070 | AACUAAGUAUGGUCGGAGGGU | 21 | 49 | Â | Â | Â | Â | * |