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Table 6 Candidates for novel barley miRNAs not previously described in rice, Brachypodium or wheat.

From: Discovery of barley miRNAs through deep sequencing of short reads

Read name

Proposed miRBase name

Read sequence

Read Length

Abundance

putative miRNA* name

putative miRNA* sequence

putative miRNA* Length

putative miRNA* abundance

Confidence

GPB235

 

AUAAAACCUUCAGCUAUCC AUC

22

4601

GPB7393

UUUGAUAUGUAAGUGGAUAGUU

22

431

***

GPB125

miR5048

UAUUUGCAGGUUUUAGGU CUAA

22

12068

GPB971

AGACCUAGACAUGCAAGUAUA

21

1201

***

GPB1131

miR5049

UCCUAAAUACUUGUUGUU GGG

21

803

GPB31055

AACAACAAGUAUUAUGGUACA

21

16

***

P51WP1692

miR408b

CAGGGAUGGAGCAGAGCAAGG

21

225

P51WP9508

UGCACUGCCUCUUCCCUGGC

20

48

***

GPB8582

miR5050

UUGAGGUCGUUCAACCAGCAA

21

78

P45NP15695

CAGCACUAGCAAGUUGGUCGACCU

24

34

***

GPB86

miR5071

UCAAGCAUCAUAUCAUGGACC

21

19176

    

**

GPA5819

miR5072

CGUUCCCCAGCGGAGUCGCCA

21

147

    

**

GPB2903

miR5054

UCCCCACGGACGGCGCCA

18

352

    

**

GPA3884

miR5055

UCUCGCUACUGAGCUCGGCAU

21

157

    

**

P45NP9164

miR5056

AGGAAGAACCGGUAAUAAGCA

21

72

    

**

P45NP15764

miR5073

GUUUGGUGAAUCGGAAACAAUUU

23

28

    

**

GPB4154

miR5057

AAAUUUCAGAUCAUUUGGACA

21

178

    

**

TF6215B7984

miR5058

AAUAGUUGAGGGAUGGAAAACA

22

68

    

**

TF6215B74145

miR5086

ACAUUGGUGGAAGGCGUGGUA

21

20

    

**

TF6215B6553

miR5074

GAAGGCCACCGUCGGCACCGC

21

142

    

**

P51WP57134

miR5059

CGUGCCUGGGCAGCACCACCA

21

16

    

**

P51WP4847

miR5075

UUCUCCGUCGACGCCAUCCGC

21

205

    

**

P51WP10727

miR5060

CGGCAAGCUAGAGACCGCCAC

21

68

    

**

P45NP51144

miR5061

UCUGUUCUGUUCUGAUCGGUA

21

24

    

**

P45NP40836

miR5051

UUUGGCACCUUGAAACUGGGA

21

21

    

**

P45NP31207

miR5076

UAAAUGGGAGCAGAGCAGGUUU

22

16

    

**

P45NP21816

 

UGAGCUACAAAAGGAUUCGUU

21

25

    

**

P45NP16270

miR1878

AUUUGUAGUGUUCGGAUUGAGUUU

24

33

    

**

GPB49459

miR5084

AUACAGUACUGCAGAGGAUCCUAA

24

16

    

**

GPB41819

miR5085

AAGGACAUUUUUUGUGGCAUG

21

47

    

**

GPB2977

miR5062a

UGAACCUUGGGGAAAAGCCGCAU

23

99

    

**

GPB5902

miR5062b

UGAACCUUAGGGAACAGCCGCAU

23

57

    

**

GPB16764

miR5063

UCCACUGGAAGAGGCUUUUGCU

22

54

    

**

P51WP18432

miR5052

ACCGGCUGGACGGUAGGCAUA

21

36

    

*

GPB1614

miR5064

UGAAUUUGUCCAUAGCAUCAG

21

513

    

*

GPB25359

miR5065

UAGGCAAUUCACAUAUACACU

21

27

    

*

GPB17570

miR5066

AAGUGUAUAUGUGGAUUGCCU

21

73

    

*

GPB26526

miR5053

CGCAGCUGUAGUCGCCGGCGU

21

22

    

*

GPB320

miR5077

GUUUCACGUCGGGUUCACCA

20

5056

    

*

P45NP187203

miR5078

GGUCGUUCGACCGCGGCAUUU

21

25

    

*

GPB373

miR5067

UGAGCGACAAGUAAUAUGGAU

21

4043

    

*

P45NP20958

miR5068

AUCAGGUAGAUCGGGUAUGGGUAU

24

40

    

*

P45NP15484

miR5079

UUUGGAUUUGUUAUUUUGGUAU

22

68

    

*

GPB9781

miR5080

AAAAAGAUCAUACCGUGAGAG

21

88

    

*

GPB37150

miR5069

UAGGUGAUUGAUUUGACUAAC

21

17

    

*

GPA47901

miR5081

UAAUUUGUAGCAAAUUGGUGU

21

16

    

*

GPA42571

miR5082

CGCGAUGAUGGCCGCGCGGGCUCA

24

17

    

*

GPA18850

miR5083

AGACUACAAUUAUCUGAUCA

20

28

    

*

GPA14470

miR5070

AACUAAGUAUGGUCGGAGGGU

21

49

    

*