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Table 1 Enrichment of GO classes and KEGG pathways in the lists of DEG

From: Gene expression analyses of immune responses in Atlantic salmon during early stages of infection by salmon louse (Lepeophtheirus salmonis) revealed bi-phasic responses coinciding with the copepod-chalimus transition

Functional group, pathway Features1 p-value2 Vocabulary
Skin    
Mitochondrion 177 / 1104 0.000 GO
Glycolysis / Gluconeogenesis 33 / 117 0.000 KEGG
Pentose phosphate pathway 13 / 48 0.009 KEGG
Glutamate metabolism 16 / 48 0.000 KEGG
Glutathione metabolism 13 / 49 0.011 KEGG
Ribosome 47 / 172 0.000 GO
Protein folding 33 / 178 0.015 GO
Protein modification 44 / 246 0.009 GO
Protein transport 78 / 473 0.004 GO
Cytoskeleton 89 / 579 0.013 GO
Myosin complex 23 / 86 0.000 GO
Endoplasmic reticulum 140 / 992 0.027 GO
Cell redox homeostasis 11 / 43 0.027 GO
Double-strand break repair 7 / 24 0.050 GO
Anti-apoptosis 41 / 200 0.001 GO
Positive regulation of apoptosis 12 / 51 0.037 GO
Antigen processing and presentation 3 17 / 69 0.007 KEGG
Leukocyte transendothelial migration 32 / 186 0.043 KEGG
Cell adhesion 83 / 545 0.020 GO
Tight junction 38 / 208 0.011 KEGG
Heparin binding 18 / 90 0.043 GO
Keratinization 8 / 21 0.006 GO
TGF-beta signaling pathway 24 / 113 0.008 KEGG
Spleen    
Inflammatory response 22 / 213 0.000 GO
Complement and coagulation cascades 29 / 85 0.000 KEGG
Peptidase activity 23 / 145 0.000 GO
Acute-phase response 8 / 20 0.000 GO
Chemotaxis 10 / 81 0.003 GO
Basement membrane 10 / 68 0.000 GO
Cell adhesion 36 / 545 0.020 GO
Extracellular space 47 / 375 0.000 GO
Heparin binding 13 / 90 0.000 GO
Neuroactive ligand-receptor interaction 14 / 173 0.036 KEGG
  1. 1 Numbers of genes among DEG and on the microarray platform. 2Yates' corrected chi-square. 3Immune related groups and pathways are highlighted with bold.