Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper

BMC Genomics

Table 3 Type III effectors specific to each species

Effector	Locus tags	Effector homolog	Pfam domains/biochemical motifs	Comments/Reference
Effectors specific toXv
XopJ2	XVE_4840 (partial); XVE_3769 (partial)	AvrBsT	C55-family cysteine protease or Ser/Thr acetyltransferase	[40]
XopAG	XVE_2415	AvrGf1	-	[39]
XopAI	XVE_4756	XAC3230	-	[25]
Effectors specific toXg
class avrBs1	XGA_0724	AvrA (84% identity)	-	This study
AvrHah1 (Fragmented in assembly)	XGA_4845/XGA_3187	AvrBs3	Transcriptional activator, nuclear localization	AvrBs3 present in few euvesicatoria strains [41].
XopAO	XGA_1250	AvrRpm1 (61% identity)	-	This study
XopAQ	XGA_2091	Rip6/rip11	No known domains	[46]
XopAS	XGA_0764/0765	HopAS1	No known domains	This study
Effectors specific toXp
XopC2	XPE_3585	Rsp1239	Haloacid dehalogenase-like hydrolase	[24]
XopJ4	XPE_1427	AvrXv4	SUMO protease (experimental); YopJ-like serine threonine acetyl transferase domain (predicted)	[38, 105]
XopAF	XPE_4185	AvrXv3	Transcriptional activator domain	[37]
XopAE	XPE_2919	HpaF/G	LRR protein	[24]
*Effectors specific toXcv***
AvrBs1	XCVd0104	AvrBs1	-	[26]
XopC1	XCV2435	XopC	Phosphoribosyl transferase domain and haloacid dehalogenase-like hydrolase	[105]
XopJ1	XCV2156	XopJ	C55-family cysteine protease or Ser/Thr acetyltransferase	[105]
XopJ3	XCV0471	AvrRxv	C55-family cysteine protease or Ser/Thr acetyltransferase	[26]
XopO	XCV1055		Unknown	[26]
XopAA	XCV3785	ECF	Early chlorosis factor, proteasome/cyclosome repeat	[26]
XopAI	XCV4428	AvrRxo1	-	[26]

ISSN: 1471-2164