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Table 5 Repertoire of cell wall degrading enzymes in xanthomonads.

From: Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper

Gene name Family Enzymatic function Xp Xac Xcv Xv Xg Xcc strain 33913 Xoo strain
KACC
Xylanases
xyn10A GH10 Endo-β-1,4-xylanase
EC:3.2.1.8
2014 4254 4360 2337 1172 4118 4429
xyn10B    2016 4252 4358 - - - 4428
xyn10C    2020 4249 4355 2333 0341 4115 -
aguA GH67 α-glucuronidase
EC:3.2.1.139
4318 4227 4333 4712 2473 4102 4419
xyn51A GH51 β-D-Arabino-furanosidase
EC:3.2.1.55
0180 1286 1335 1029/1030 2303 1191 1317
xyn5A GH5 Endo-β-1,4-xylanase
EC:3.2.1.8
4682 0933/34 partial 0965 - - 0857 3618
Glucanases
cel8A GH8 Endo-1,4-β-D glucanase 1965 3516 3641 0432 - - -
cel9A GH9   2345 2522 2704 1327 0588 2387 -
Pectate lyases
pel1A PL1 Pectate lyase
EC:4.2.2.2
3841 3562 3687 1933 4024 0645 0821
pel1B    1563 2986 3132 3512 0893 2815 -
pel1C    - 2373 2569 - - - -
pel3A PL3 Pectate lyase
EC:4.2.2.2
- 2922 - 3222 2761 1219 -
pel4A PL4 Rhamno-galacturonan lyase
EC:4.2.2.-
1975 3505 3632 2592 4531 3377/78/79 1078
pel9A PL9 Pectate lyase
EC:4.2.2.2
- - 2278 1927 1853 - 2265
pel10A PL10 Pectate lyase
EC:4.2.2.2
- - - 4069 5124 0122 -
  1. Different cell wall degrading enzymes, such as xylanase, pectate lyase, glucanases, were compared for their repertoires among already sequenced xanthomonads including our draft genomes. Genes identified by their locus tags in the respective genomes.