Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos)

BMC Genomics

Table 1 Summary of DNA sequence filtering results

	raw (76 bp)	l62 N. q12 o152¹	%	paired-end	%	single	%
reads	34818352	16611852	47.7	10793170	65.0	5818682	35.0
bases	2547361732	1029934824	40.4	669176540	65.0	360758284	35.0

Paired and single sequence reads remaining after filtering raw reads.
¹Raw sequences were filtered for length 62. Only reads without base-call errors (N or) were considered. Singly represented reads are required to have a per base-call quality of 12. Sequences more than four times overrepresented, based on the raw RRL coverage (38×, see methods) were discarded.

ISSN: 1471-2164