Table 1 Summary of read signatures that match various RNAs
Locus class | Distinct signatures | Total signatures |
|---|---|---|
Nonprotein-coding RNAs | ||
snoRNA | 387(0.05%) | 6695(0.10%) |
snRNA | 465(0.06%) | 5567(0.08%) |
tRNA | 2596(0.34%) | 195000(2.84%) |
rRNA | 21675(2.81%) | 701447(10.21%) |
siRNA | 14026(1.82%) | 198156(2.88%) |
Small RNA matching protein-coding genes | ||
exon_antisense | 17284(2.24%) | 116288(1.69%) |
exon_sense | 30111(3.91%) | 265100(3.86%) |
intron_antisense | 33978(4.41%) | 274188(3.99%) |
intron_sense | 93438(12.12%) | 825860(12.02%) |
miRNAs | ||
Known | 431(0.06%) | 1047447(15.25%) |
Novel | 1068(0.14%) | 49333(0.72%) |
Other smallRNAs | 555208(72.04%) | 3185454(46.36%) |
Total | 770667 | 6870535 |