| Pgt ESTs Pgt genome a | Pgt proteins b | Pt genome c | Pst ESTs d | Mlp proteins e | U. maydis ESTs f | U. maydis genome g |
---|
e_value | BLASTN | TBLASTX | BLASTX | BLASTN | BLASTN | TBLASTX | BLASTX | TBLASTX | TBLASTX |
---|
< = -100 | 863 (867) 131 (131) | 490 (490) 394 (394) | 285 (285) | (3426) | 120 (120) | 79 (70) | 117 (117) | 68 (68) | 67 (67) |
-100 < × ≤ -50 | 434 (442) 466 (466) | 749 (751) 829 (829) | 763 (763) | (678) | 151 (151) | 253 (254) | 434 (434) | 277 (277) | 249 (249) |
-50 < × ≤ -20 | 452 (481) 879 (879) | 786 (815) 971 (972) | 957 (958) | (395) | 211 (213) | 377 (381) | 795 (796) | 533 (535) | 487 (489) |
-20 < × ≤ -5 | 513 (612) 878 (878) | 753 (849) 832 (899) | 745 (764) | (250) | 270 (292) | 473 (516) | 758 (781) | 629 (656) | 656 (680) |
TOTAL | 2262 (2402) 2354 (2354) | 2778 (2905) 3026 (3094) | 2750 (2770) | (4749) | 752 (776) | 1182 (1230) | 2104 (2128) | 1507 (1535) | 1459 (1485) |
- a the 6,308 most-likely Pt unigene subset (as well as the complete 13,328 Pt unigene sequences: numbers in parentheses) were compared to available Pgt ESTs and genome sequences (upper and lower line in each cell, respectively), using the algorithms indicated
- b results comparing the 20,567 and 18,241 (excluding mostly TE-related) gene calls, were identical
- c early Pt genome Sanger and 454 sequences
- d set of 3,297 published, most-likely P. striiformis f. sp. tritici EST sequences from NCBI dbEST [17, 20, 21]
- e set of 16,831 predicted proteins from the Melampsora laricis-populina genome (http://genome.jgi-psf.org/Mellp1/Mellp1.home.html)
- f predicted/valid transcripts (many matching ESTs, [43, 56, 57], Morrison et al. in preparation] and 364 additional EST unigenes not predicted in the Um genome at MIPS
- g MUMDB (http://mips.helmholtz-muenchen.de/genre/proj/ustilago)