Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize

Xing, Hongyan; Pudake, Ramesh N; Guo, Ganggang; Xing, Guofang; Hu, Zhaorong; Zhang, Yirong; Sun, Qixin; Ni, Zhongfu

doi:10.1186/1471-2164-12-178

BMC Genomics

Table 1 ARF gene family in Maize

From: Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize

Gene Name^a	ORF length (bp)^b	Deduced polypeptide^c			Chr. Locus^d	Genomic Locus^e			EST^g	Physical Block^h	Block Pairsⁱ
		Length (aa)	MW (kDa)	PI		BAC	GenBank Accessions, DNA	Nearest Marker^f
ZmARF1	3261	1086	120.15	6.25	1.06	AC208531	HM004516	bnlg1057	CO533792
ZmARF2	2046	681	74.53	7.93	1.08	AC194848	HM004517	umc1096	BT060467	45-49	10La
ZmARF3	2451	816	90.85	6.38	2.01	AC191413	HM004518	umc2046	AY110452	68-82	4L
ZmARF4	2808	935	102.78	6.12	2.01	AC204518	HM004519	umc1622	EE039613	68-82	4L
ZmARF5	1542	513	55.44	6.40	2.03	AC200303	HM004520	umc1021	BT066632	68-82	4L
ZmARF6	1974	657	72.94	6.14	2.04	AC190503	HM004521	umc1089	BT067327
ZmARF7	2061	686	76.70	6.29	3.00	AC190684	HM004522	bnlg108	EC885481
ZmARF8	2124	707	75.35	7.10	3.01	AC184124	HM004523	phi049	EU965402
ZmARF9	2646	881	97.03	6.01	3.04	AC193407	HM004524	AI881370	EE037883
ZmARF10	2400	799	89.22	6.25	3.06	AC193433	HM004525	bnlg1176	BT055015	125-151	1L
ZmARF11	2067	688	74.98	7.28	3.07	AC210193	HM004526	pco114882	DR820421	125-151	1L
ZmARF12	2127	708	77.95	7.11	3.08	AC202124	HM004527	umc1690	EU947189
ZmARF13	2553	850	93.13	7.01	4.03	AC197426	HM004528	umc2199	BT069005
ZmARF14	2019	672	74.84	6.25	4.05	AC208514	HM004529	umc1103	EE174911
ZmARF15	2136	711	75.93	7.23	4.06	AC205511	HM004530	bnlg1755	BT087991
ZmARF16	2718	905	100.23	6.10	4.09	AC195460	HM004531	umc1143	EU955385
ZmARF17	1935	644	70.95	6.97	5.03	AC184866	HM004532	umc2352	BT066347	212-219	10La
ZmARF18	2742	913	100.89	6.54	5.03	AC196992	HM004533	umc1315	EE176799
ZmARF19	2151	716	77.51	7.14	5.03	AC207656	HM004534	umc1610	AY105182
ZmARF20	3450	1149	127.47	6.17	5.03	AC194218	HM004535	umc1154	EE290325
ZmARF21	2097	698	74.99	8.26	6. 02	AC197562	HM004536	umc1656	BT083638
ZmARF22	2778	925	102.23	6.44	6. 02	AC195867	HM004537	bnlg2151	CA272068
ZmARF23	2043	680	73.94	6.86	6. 06	AC187896	HM004538	umc1103	BT067427
ZmARF24	2211	736	80.45	7.84	6. 07	AC204859	HM004539	umc1350	AY109838
ZmARF25	2406	801	89.75	6.47	8.06	AC203318	HM004540	umc1161	BT067605	324-366	1L
ZmARF26	2061	686	74.34	7.10	8.09	AC208613	HM004541	umc1638	BT087971	324-366	1L
ZmARF27	3162	1053	116.73	6.67	9.01	AC211017	HM004542	umc2335	CD439516
ZmARF28	2442	813	89.69	7.14	10.03	AC190927	HM004543	umc1863	BT066544
ZmARF29	2838	945	103.82	6.31	10.07	AC201888	HM004544	pco137895	CO441386	411-420	4L
ZmARF30	2430	809	90.30	6.24	10.07	AC200880	HM004545	pco137999	EC901065	411-420	4L
ZmARF31	1389	462	50.55	5.41	10.07	AC190828	HM004546	umc1038	BT067850	411-420	4L

^a Systematic designation given to maize ARFs in this work.
^b Length of open reading frame in base pairs.
^c The number of amino acids, molecular weight (kilodaltons), and isoelectric point (pI) of the deduced polypeptides.
^d Location of the ZmARF genes to the Chromosome bins.
^e BAC name, DNA accession number where the ZmARF gene is present.
^f Nearest marker to the ZmARF gene.
^g Representative EST/cDNA in GenBank corresponding to ZmARF gene.
^h Location of the ZmARF genes to the physical blocks [32].
^I Location of the ZmARF genes to the block pairs [32]. Six ZmARF sister pairs are mapped on the same duplicated chromosomal blocks: ZmARF2 and 17 in 10La, ZmARF3 and 30 in 4L, ZmARF4 and 29 in 4L, ZmARF5 and 31 in 4L, ZmARF10 and 25 in 1L, ZmARF11 and 26 in 1L.

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ISSN: 1471-2164

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