Table 1 General genomic features of the strains analysed in this study, the C. novyi-NT genome and the so far released genomic sequences of C. botulinum group III plasmids.
Species and type (strain) | Origin (year of isolation) | GenBank accession number | Replicon | Size (bp) | %GC | CDS (%) |
|---|---|---|---|---|---|---|
C. botulinum C/D | Poultry, Sweden | CP002410 | chromosome | 2 773 191 | 28 | 2546 (86) |
(08-BKT015925) | (2008) | CP002411 | p1BKT015925c | 203 287 | 27 | 221 (80) |
CP002412 | p2BKT015925 | 98 732 | 26 | 103 (75) | ||
CP002413 | p3BKT015925d | 80 365 | 27 | 90 (78) | ||
CP002414 | p4BKT015925 | 39 648 | 28 | 53 (82) | ||
CP002415 | p5BKT015925 | 12 403 | 26 | 13 (61) | ||
total plasmids | 434 435 | |||||
total | 3 207 676 | |||||
C. botulinum C/D | Gull, Sweden | AESC00000000 | draft genome | ~3.1 Mb | 28 | |
(07-V891) | (2007) | |||||
C. botulinum C | Mink, Sweden | AESA00000000 | draft genome | ~2.7 Mb | 27 | |
(C-Stockholm) | (1949) | AESA00000000 | p6CSt | 55 058 | 27 | 87 (83) |
C. novyi A | Gas gangrene | CP00382 | chromosome | 2 547 720 | 28 | 2315 (86) |
(C. novyi-NT) b | (1920) | |||||
C. botulinum D | Pork, Chad | CP001659 | pCLG1d | 107 690 | 26 | 124 (78) |
(1873) | (1958) | CP001660 | pCLG2 | 54 152 | 25 | 47 (25) |
C. botulinum C | unknown | AP010934 | pC2C203U28d | 106 981 | 26 | 122 (79) |
(C-203U28)a | ||||||
C. botulinum C | Mink, Sweden | AP008983 | Phage c-Stockholmc | 185 683 | 26 | 198 (83) |
(C-Stockholm) | (1949) |