Comparative supragenomic analyses among the pathogens Staphylococcus aureus, Streptococcus pneumoniae, and Haemophilus influenzae Using a modification of the finite supragenome model

Table 1 Bacterial Chromosome Sequence Datasets Used for Supragenome Analysis

Genome*	Reference	Sensitivity	MBp	Contigs	%GC	Plasmids	Source
CGSSa00	this publication	untested	2.78	18	32.7	unknown
CGSSa01	this publication	untested	2.86	58	32.6	unknown	elbow arthroplasty infection
CGSSa03	this publication	untested	2.83	68	32.8	unknown	abdominoplasty infection
COL	Gill et al., 2005	MRSA	2.81	1	32.8	1
JH1	Mwangi et al., 2007	VISA	2.91	1	33.0	1	patient on vancomycin
JH9	Mwangi et al., 2007	VISA	2.91	1	33.0	1	patient on vancomycin
MRSA252	Holden et al., 2004	MRSA	2.90	1	32.8	0
MSSA476	Holden et al., 2004	MSSA	2.80	1	32.8	1
Mu3	Neoh et al., 2008	hetero-VISA	2.88	1	32.9	0
Mu50	Kuroda et al., 2001	HA-MRVISA	2.88	1	32.9	1	pus, neonatal surgical infection
MW2	Baba et al., 2002	CA-MRSA	2.82	1	32.8	0
N315	Kuroda et al., 2001	MRSA	2.81	1	32.8	1	pharyngeal smear
NCTC8325	Gillaspy et al., 2006	MRSA	2.82	1	32.9	0
Newman	Baba et al., 2008	MSSA	2.88	1	32.9	0
RF122 (ET3-1)	Herron-Olson et al., 2007	sensitive	2.74	1	32.8	0	mastitis (bovine)
USA300 (FPR3757)	Diep et al., 2006	CA-MRSA	2.87	1	32.8	3	abscess, HIV + i.v. drug user
USA300TCH15	Highlander et al., 2007	CA-MRSA	2.87	1	32.8	1	asymptomatic pediatric patient

*The NCBI's "genus species [subspecies]" name for each strain is either Staphylococcus aureus (for the bovine isolate RF122) or Staphylococcus aureus subsp. aureus. Abbreviations: Antibiotic sensitivity: CA, community-acquired; HA, healthcare-acquired; M, methicillin; R, resistant; S, sensitive; V, vancomycin; VI, V-intermediate; hetero-VI, heterogeneous VI; SA, Staphylococcus aureus.

ISSN: 1471-2164