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Table 2 Correlation of the transcriptome results obtained by the MPSS and SBS technologies

From: Deep sequencing reveals the complex and coordinated transcriptional regulation of genes related to grain quality in rice cultivars

Cultivar

Correlation coefficient using

all significant signatures*

Correlation coefficient after

removing few outliers

Cypress

0.61

0.85 (removal of 3 out of 5,803 signatures)

LaGrue

0.49

0.83 (removal of 6 out of 6,028 signatures)

Nipponbare

0.53

0.87 (removal of 4 out of 7,815 signatures)

Ilpumbyeo

0.39

0.81 (removal of 8 out of 6,985 signatures)

YR15965

0.58

0.90 (removal of 4 out of 5,757 signatures)

  1. * Only genome matched significant signatures were used.