Skip to main content

Table 3 The number of over five fold up- and down-regulated genes in Cypress in comparison to LaGrue and Nipponbare and in Ilpumbyeo in comparison to YR15965 and Nipponbare

From: Deep sequencing reveals the complex and coordinated transcriptional regulation of genes related to grain quality in rice cultivars

Classification of genes Cypress Ilpumbyeo
  MPSS SBS Common MPSS SBS Common
Total number of up-regulated genes 1536 (44)* 4,030 (70) 419 (16) 2,396 (39) 3,339 (50) 518 (8)
Total number of down regulated genes 1409 (33) 1,373 (14) 168 (3) 514 (11) 2,119 (47) 106 (4)
Total number of up-regulated antisense genes 164 (12) 1,266 (32) 23 (5) 256 (7) 1196 (28) 32 (1)
Total number of down regulated antisense genes 53 (7) 330 (4) 6 (0) 22 (5) 372 (17) 3 (1)
Total number of up-regulated genes with alternate transcripts 174 382 3 322 305 9
Total number of down regulated genes with alternate transcripts 131 95 2 57 195 2
Total number of up-regulated transcription factor genes 125 273 37 182 235 14
Total number of down regulated transcription factor genes 102 90 50 34 51 5
  1. *Inside parenthesis is the number of grain quality-related genes