Table 3 The number of over five fold up- and down-regulated genes in Cypress in comparison to LaGrue and Nipponbare and in Ilpumbyeo in comparison to YR15965 and Nipponbare
Classification of genes | Cypress | Ilpumbyeo | ||||
|---|---|---|---|---|---|---|
| Â | MPSS | SBS | Common | MPSS | SBS | Common |
Total number of up-regulated genes | 1536 (44)* | 4,030 (70) | 419 (16) | 2,396 (39) | 3,339 (50) | 518 (8) |
Total number of down regulated genes | 1409 (33) | 1,373 (14) | 168 (3) | 514 (11) | 2,119 (47) | 106 (4) |
Total number of up-regulated antisense genes | 164 (12) | 1,266 (32) | 23 (5) | 256 (7) | 1196 (28) | 32 (1) |
Total number of down regulated antisense genes | 53 (7) | 330 (4) | 6 (0) | 22 (5) | 372 (17) | 3 (1) |
Total number of up-regulated genes with alternate transcripts | 174 | 382 | 3 | 322 | 305 | 9 |
Total number of down regulated genes with alternate transcripts | 131 | 95 | 2 | 57 | 195 | 2 |
Total number of up-regulated transcription factor genes | 125 | 273 | 37 | 182 | 235 | 14 |
Total number of down regulated transcription factor genes | 102 | 90 | 50 | 34 | 51 | 5 |