Table 1 Comparison of the performance of the three versions of GS de novo assemblers for genomic assembly
Description | Version 2.3 | Version 2.5p1 | Version 2.5.2 |
|---|---|---|---|
No. of reads used for assembly | 304,619 | 303,601 | 303,601 |
No. of reads assembled in to contigs | 248,857 | 247,757 | 247,757 |
No. of contigs assembled | 17, 613 | 17,457 | 17,457 |
No. of singletons | 54,669 | 54,002 | 54,002 |
Average contig length (bases) | 909 | 916 | 916 |
Largest contig length (bases) | 7,170 | 7,173 | 7,173 |