Table 1 Predominant functional annotations obtained for genes found in selected clusters from Figure 2
From: Expression variability of co-regulated genes differentiates Saccharomyces cerevisiae strains
Cluster1 | Functional categories2 | TF3 | Selection of genes |
|---|---|---|---|
II | Carbohydrate metabolism Energy reserve metabolic processes Oxidative phosphorilation Utilization of amino acids as N source Glutamate pool management Amino acid transport | STRE element Msn2p Msn4p Adr1p Sut1p | DAL2-4, DAL82, DUR1,2, PUT2, GDH2, GDH3, GAP1, UGA4 |
V | Generation of precursor metabolites and energy Trans-membrane transport Pleiotropic drug resistance Amino acid biosynthesis and transport | Adr1p | SNF1, JEN1, CAT8, ADR1, MAL31, HXT5, AZR1, PDR10, YOR1, CRS5, TPO2, TPO3, MUP3, STR3, MET32, PUT4 |
X | Sugar transport Pheromone signaling Mating Meiotic recombination | No enrichment | MAL11, MPH2, BAR1, STE2, STE6, PRM8, ASG7, FUS1, GPA1, MFA2, STE18, HO, REC102, SPO11 |
XII | Response to toxins Nitrogen catabolite repression | No enrichment | AAD4, AAD6, AAD14, AAD16, ADH7, DAL80 |
XIII | Sterol metabolism Thiamine biosynthesis Cell wall composition Iron homeostasis Pleiotropic drug resistance | Mot3p Nrg1p Aft2p Cin5p | DAN1-DAN4, TIR4, PAU1-PAU6, ARE1, HES1, FET4, PDR11 |