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Table 5 List of sequences that were differently expressed in guppies exposed to predators and guppies that were not

From: Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome

Sequence name

Log FC

P-value

FDR

Counts pred - 1

Counts pred - 2

Counts pred + 1

Counts pred + 2

Annotation (accession #)

contig36557

-30.67

2e-08

0.0004

16

32

0

0

 

ES381343

-4.02

3e-08

0.0004

175

443

22

16

hepcidin-like precursor (AAS66305.1)

contig46890

-30.54

1.1e-07

0.0009

14

30

0

0

 

contig41409

4.61

1.1e-07

0.0009

3

0

25

49

 

contig34882

-5.98

1.3e-07

0.0009

19

44

0

1

 

contig40497

1.66

1.9e-07

0.0010

184

193

524

671

Cerebellin-2 (Q8BGU2.1)

contig34536

-3.73

2.4e-07

0.0011

33

60

5

2

hepcidin-like precursor (AAS66305.1)

contig30446

-3.9

5.4e-07

0.0022

41

94

6

3

LINE-1 reverse transcriptase homolog (P08548.1)

ES374452

2.54

6.7e-07

0.0024

12

9

69

53

Fibrocystin-L (Q86WI1.1)

ES383031

3.47

1.7e-06

0.0054

94

90

493

1588

Nattectin Precursor (Q66S03.1)

contig06616

1.8

2.3e-06

0.0068

47

52

146

200

Cerebellin-1; (P63182.2)

ES376890

-1.47

3.7e-06

0.0098

493

601

196

200

Fibronectin (P07589.4)

contig32843

2.63

4.3e-06

0.0106

5

5

31

31

 

contig46202

29.67

4.9e-06

0.0111

0

0

10

14

 

ES371621

-1.56

5.2e-06

0.0111

345

419

135

124

Proactivator polypeptide (P07602.2)

contig18751

1.66

8.4e-06

0.0168

70

64

176

249

 

contig36338

-30.17

1.6e-05

0.0294

8

26

0

0

 

contig38849

-1.91

2.1e-05

0.0352

53

56

16

13

Complement C1q tumor necrosis factor-related protein (P0C862.1)

ES371258

1.68

2.1e-05

0.0352

132

87

312

392

 

contig40097

2.14

2.2e-05

0.0352

10

9

36

48

Granzyme A (P11032.2)

contig13556

1.44

3.2e-05

0.0494

97

92

216

299

 

contig37489

-1.98

3.5e-05

0.0494

47

48

14

10

 

contig33977

4.64

3.6e-05

0.0494

1

0

10

15

 

ES383122

-4.06

3.7e-05

0.0494

17

50

3

1

60S ribosomal protein L11 (Q5RC11)

  1. Shown is the log fold change (Log FC) of the number of counts, p-value, corrected p-value (FDR), counts for samples not exposed to predators (pred - 1 and pred - 2) and exposed to predators (pred + 1 and pred + 2). Annotation is from either the Swiss-prot or the NR databases with their accession number in brackets.