Table 3 Potential function of transcripts mapping to the ASGR-carrier chromosome based on BlastX or BlastN.
Ps26 Contig | BC8 Contig | Overlap length (bp) | BlastX | BlastN (E-Value) to EST_OTHERS | BlastX of EST hit in BlastN column |
|---|---|---|---|---|---|
Ps26_ c10331 | BC8_ c7991 | 241 | no hit | RCRST0_005870 Foxtail millet EC612643.1 GI:149362118 (3e-55) | no hit |
Ps26_ c11544 | BC8_ c10325 | 228 | no hit | no hit | Â |
Ps26_ c13157 | BC8_ c5112 | 227 | no hit | no hit | Â |
Ps26_ c13655 | BC8_ c24571 | 192 | no hit | pPAP_06_E02 Apomictic pistil BM084376.1 GI:27532285 (8e-24) | putative 26S proteasome non-ATPase regulatory subunit 3 ACG34075.1 GI:195624490 |
Ps26_ c1372 | BC8_ c12789 | 326 | no hit | CCGC4364.g1 CCGC Panicum virgatum early floral buds + reproductive tissue FL750787.1 GI:198007657 (e-174) | NADH-ubiquinone oxidoreductase 51 kDa subunit NP_001148767.1 GI:226532265 |
Ps26_ c13922 | BC8_ c12833 | 212 | no hit | no hit | Â |
Ps26_ c2448 | BC8_ c12858 | 225 | no hit | pPAP_10_F04 Apomictic pistil FL813942.1 GI:198086024 (2e-57) | ankyrin protein kinase-like NP_001152470.1 GI:226495939 |
Ps26_ c30691 | BC8_ c10294 | 206 | no hit | no hit | Â |
Ps26_ c3546 | BC8_ c8622 | 295 | no hit | no hit | Â |
Ps26_ c5080 | BC8_ c12542 | 212 | hypothetical protein OsJ_24918 EEE67490.1 GI:222637358 | Â | Â |
Ps26_ c583 | BC8_ c6141 | 223 | no hit | 6X_JF-rd_A11 pAPO Cenchrus ciliaris EB652936.1 GI:164107582 (6e-127) | SRC2 protein kinase C -phospholipids ACG40316.1 GI:195641696] |
Ps26_ c8165 | BC8_ c5964 | 185 | no hit | 84Z_JF_G03 pAPO Cenchrus ciliaris EB661430.1 GI:164123871 (7e-70) | TPA: AT-hook motif nuclear localized protein 2 FAA00302.1 GI:119657406 |
Ps26_ c9369 | BC8_ c3452 | 190 | hypothetical protein OsJ_30933 EAZ15525.1 GI:125574241 | Â | Â |
Ps26_ c2339 | BC8_ c7917 | 264 | no hit | CCGG12847.g1 CCGG Panicum virgatum late flowering buds FL812358.1 GI:198084376 (e-23) | ESP4 (ENHANCED SILENCING PHENOTYPE 4) NP_195760.1 GI:15240970 |
Ps26_ c1279 | BC8_ c8634 | 243 | ENT domain containing protein ACG36577.1 GI:195629872 | Â | Â |
Ps26_ c7587 | BC8_ c11918 | 202 | ATPNG1 (Arabidopsis Thaliana PEPTIDE-N-GLYCANASE 1) NP_199768.1 GI:15240508 | Â | Â |
Ps26_ c2785 | BC8_ c8847 | 273 | ubiquitin-conjugating enzyme E2 N NP_001148361.1 GI:226491078 | Â | Â |
Ps26_ c194 | BC8_ c2920 | 304 | no hit | no hit | Â |
Ps26_ c17388 | BC8_ c6454 | 208 | histone 4 BAG68513.1 GI:195972757 | Â | Â |
Ps26_ c3455 | BC8_ c8607 | 193 | no hit | 26X_JF_C01 pAPO Cenchrus ciliaris EB655151.1 GI:164198597 (e-102) | putative condensing XP_002529162.1 GI:255576542 |
Ps26_ c1312 | BC8_ c3757 | 313 | no hit | 25X_JF_D10 pAPO Cenchrus ciliaris EB656417.1 GI:164027660 (2e-47) | protein phosphatase 2A regulatory subunit A AAM94368.1 GI:22296816 |
Ps26_ c338 | BC8_ c3527 | 419 | universal stress protein (USP) family protein NP_001159067.1 GI:259490110 | Â | Â |
Ps26_ c33813 | BC8_ c2708 | 229 | putative MADS-domain transcription factor CAA70485.1 GI:3851333 | Â | Â |
Ps26_ c1422 | BC8_ c3852 | 245 | no hit | no hit | Â |
Ps26_ c6131 | BC8_ c8955 | 224 | no hit | CCHY9952.g1 CCHY Panicum virgatum callus FL987585.1 GI:198319427 (e-49) | putative calcium-dependent protein kinase ACG46220.1 GI:195653505 |
Ps26_ c2388 | BC8_ c2949 | 201 | no hit | 6W6III_JF_H03 pAPO Cenchrus ciliaris EB662068.1 GI:164227478 (3e-48) | polygalacturonase inhibitor 1 precursor ACG36448.1 GI:195629614 |
Ps26_ c32589 | BC8_ c3672 | 229 | no hit | 71Z_JF_B09 pAPO Cenchrus ciliaris EB654350.1 GI:163993222 (5e-93) | putative microtubule-associated protein CAD23144.1 GI:37776903 |
Ps26_ c10535 | BC8_ c22186 | 182 | no hit | no hit | Â |
Ps26_ c2807 | BC8_ c12602 | 241 | no hit | 5X_JF_A06 pAPO Cenchrus ciliaris EB652848.1 GI:164180053 (6e-116) | Phosphoglucomutase/phosphomannomutase C terminal ABN08987.1 GI:124361015 |
Ps26_ c2838 | BC8_ c3538 | 183 | no hit | no hit | Â |
Ps26_ c3609 | BC8_ c10814 | 245 | no hit | no hit | Â |
Ps26_ c5210 | BC8_ c5192 | 273 | hypothetical protein OsJ_25077 EEE67565.1 GI:222637433 | Â | Â |
Ps26_ c6744 | BC8_ c292 | 257 | ADP-ribosylation factor BAB90396.1 GI:20161472 | Â | Â |
Ps26_ c9776 | BC8_ c4965 | 258 | no hit | MK_7_78 Pennisetum glaucum seedlings CD726437.1 GI:32277284 (2e-46) | hypothetical protein SORBIDRAFT_07g010440 XP_002444160.1 GI:242078783 |
Ps26_ c5851 | BC8_ c5854 | 192 | no hit | no hit | Â |
Ps26_ c6373 | BC8_ c6664 | 235 | no hit | 1475276 CERES-197 Zea mays FL451677.1 GI:211043870 (2e-41) | hypothetical protein LOC100276553 NP_001143786.1 GI:226505008 |
Ps26_ c30198 | BC8_ c9466 | 220 | centromere/microtubule binding protein cbf5, putative XP_002523427.1 GI:255564866 | Â | Â |
Ps26_ c3993 | BC8_ c16185 | 246 | fk506-binding protein, putative XP_002534360.1 GI:255587693 | Â | Â |
Ps26_ c4364 | BC8_ c15332 | 181 | no hit | CCHZ9541.g1 CCHZ Panicum virgatum GD021384.1 GI:198352214 (5e-31) | helix-loop-helix-like protein AAO72577.1 GI:29367409 |
Ps26_ c1472 | BC88_ c3819 | 330 | small zinc finger-like protein AAD40002.1 GI:5107180 | Â | Â |
Ps26_ c1406 | BC8_ c4551 | 221 | putative anther ethylene-upregulated protein ER1 BAC79907.1 GI:33146619 | Â | Â |
Ps26_ c1878 | BC8_ c7425 | 242 | no hit | CCGI4193.g1 CCGI Panicum virgatum FL856163.1 GI:198128193(3e-69) | hypothetical protein SORBIDRAFT_02g036200 XP_002460850.1 GI:242045958 |
Ps26_ c19109 | BC8_ c9186 | 205 | no hit | no hit | Â |
Ps26_ c22381 | BC8_ c547 | 185 | no hit | 2X6III_JF-rd_A11 pAPO Cenchrus ciliaris EB652659.1 GI:164076750 (7e-58) | APx2 - Cytosolic Ascorbate Peroxidase ACG41151.1 GI:195643366 |
Ps26_ c28392 | BC8_ c12100 | 230 | no hit | no hits | Â |
Ps26_ c4150 | BC8_ c3261 | 276 | rRNA-processing protein EBP2, putative XP_002526440.1 GI:255570978 | Â | Â |
Ps26_ c704 | BC8_ c1322 | 368 | 26S protease regulatory subunit, Putative XP_002526219.1 GI:255570523 | Â | Â |
Ps26_ c2552 | BC8_ c1808 | 384 | 40S ribosomal protein S6 ACG31980.1 GI:195620300 | Â | Â |
Ps26_ c14318 | BC8_ c14583 | 366 | triose phosphate/phosphate translocator ACG33816.1 GI:195623972 | Â | Â |