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Table 1 Summary of identified sRNA features

From: Detection of small RNAs in Bordetella pertussis and identification of a novel repeated genetic element

Transcript name

Gene name

Predicted 5' coordinate a

Predicted 3' coordinate a

Predicted length b

Approx. obs. length c

sRNA orientation d

IGR length e

5' gene name and orientation f

3' gene name and orientation f

TranscriptA1

bprA1

488504

488654

150

250

<

522

BP0475 <

BP0477 >

TranscriptA2

bprA2

488504

488654

150

300

<

522

BP0475 <

BP0477 >

TranscriptB

bprB

1494130

1494207

77

80

>

726

BP1418 <

BP1419 >

TranscriptC

bprC

1968374

1968529

155

190

>

425

BP1878 <

BP1879 >

TranscriptD1

bprD1

2624007

2624157

150

90

<

783

BP2479 <

BP2480 >

TranscriptD2

bprD2

2624007

2624157

150

110

<

783

BP2479 <

BP2480 >

TranscriptE1

bprE1

2699394

2699487

93

70

>

239

BP2546 <

BP2547 >

TranscriptE2

bprE2

2699394

2699487

93

80

>

239

BP2546 <

BP2547 >

TranscriptF1

bprF1

3099570

3099720

150

80

<

256

BP2908 <

BP2909 <

TranscriptF2

bprF2

3099570

3099720

150

150

<

256

BP2908 <

BP2909 <

TranscriptG

bprG

3173584

3173734

150

70

<

305

BP2982 >

BP2983 >

TranscriptH

bprH

3178090

3178331

241

70

>

318

BP2984 >

BP2985 >

TranscriptI

bprI

3263729

3263815

86

450

<

277

BP3061 >

BP3062 >

TranscriptJ

bprJ

3605317

3605397

80

70

>

206

BP3395 <

BP3396 <

TranscriptK

bprK

3619230

3619365

135

200

<

316

BP3410 <

BP3411 >

TranscriptL1

bprL1

3811548

3811699

151

80

<

336

BP3594 <

BP3595 >

TranscriptL2

bprL2

3811548

3811699

151

350

<

336

BP3594 <

BP3595 >

TranscriptL'

bprL'

3811548

3811699

151

80

>

336

BP3594 <

BP3595 >

TranscriptM

bprM

3896371

3896457

86

190

<

281

BP3686 >

BP3687 >

TranscriptM'

bprM'

3896371

3896457

86

190

>

281

BP3686 >

BP3687 >

TranscriptN1

bprN1

3956837

3956934

97

80

<

393

BP3747 >

BP3748 <

TranscriptN2

bprN2

3956837

3956934

97

110

<

393

BP3747 >

BP3748 <

  1. aGenomic coordinates as predicted by RNAz.
  2. bIn nucleotides.
  3. csRNA length, in nucleotides, determined from apparent sizes on Northern blots.
  4. dGenomic orientation of sRNA transcripts. '>' = on positive strand: the strand given in the GenBank genome database (NC_002929); '<' = on negative strand: the complementary strand.
  5. eLength, in nucleotides, of the IGRs containing sRNA genes (according to the annotation).
  6. fGenomic orientation of flanking mRNAs. '>' = on positive strand: the strand given in the GenBank genome database (NC_002929); '<' = on negative strand: the complementary strand.
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BMC Genomics

ISSN: 1471-2164

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