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Table 1 Enrichment of known cis-acting regulatory elements in 1000-bp region upstream of ABA-regulated genes

From: Common and unique elements of the ABA-regulated transcriptome of Arabidopsis guard cells

Motif name Motif sequence All genes GC_up (696) GC_down (477) LF_up (596) LF_down (441)
   Hits Hits P-value Hits P-value Hits P-value Hits P-value
ABRE (C/G/T)ACGTG(G/T)(A/C) 3178 382 7.1E-149 49 0.99 188 2.3E-29 57 0.71
CE3 ACGCGTGTC 24 7 3.5E-7 0 0.40 6 1.9E-6 1 0.08
DRE/CRT (A/G)CCGAC 2748 137 2.0E-9 56 0.56 85 0.04 58 0.22
CBF binding (A/G)(C/T)CGAC 6236 284 3.6E-15 131 0.47 215 1.2E-6 133 0.09
LTRE CCGAC 5062 229 2.0E-11 106 0.48 162 1.8E-3 119 7.7E-3
MYB binding (C/T)AAC(G/T)G 9108 313 3.2E-3 213 0.02 246 0.25 195 0.03
MYC binding CACATG 4909 180 2.7E-3 138 5.5E-5 165 1.5E-4 118 3.8E-3
SORLIP1AT GCCAC 6609 321 1.4E-22 152 0.08 189 0.07 136 0.19
  1. 'All genes' means all genes represented in the Affymetrix ATH1 chips. "GC_up" and "GC_down" represent ABA-induced and ABA-repressed genes in guard cells, respectively. "LF_up" and "LF_down" mean ABA-induced and ABA-repressed genes in leaves, respectively. The numbers in brackets in the header denote the total number of ABA-regulated genes in the corresponding category. P-values smaller than 0.01 are marked in bold.