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Table 6 Summary of homology searches of contigs and singletons representing highly repetitive sequences of flax

From: Physical mapping and BAC-end sequence analysis provide initial insights into the flax (Linum usitatissimum L.) genome

 

Hits of >80 bp in length

  

Database

Number of hits

Actual high scoring

portion (HSP) (bp)

Number of hits

(<80 bp in length)

Number of reads not

finding any hits

Repbase-Viridiplantae

1

314

135

1193

TIGR repeats

0

-

-

1329

TREP repeats

0

-

5

1324

Flax-EST

498

149,059

222

609

NCBI-EST

231

60,130

185

913

NCBI-nt

385

115,237

73

871

NCBI-nr

261

-

110

958