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Table 6 Summary of homology searches of contigs and singletons representing highly repetitive sequences of flax

From: Physical mapping and BAC-end sequence analysis provide initial insights into the flax (Linum usitatissimum L.) genome

  Hits of >80 bp in length   
Database Number of hits Actual high scoring
portion (HSP) (bp)
Number of hits
(<80 bp in length)
Number of reads not
finding any hits
Repbase-Viridiplantae 1 314 135 1193
TIGR repeats 0 - - 1329
TREP repeats 0 - 5 1324
Flax-EST 498 149,059 222 609
NCBI-EST 231 60,130 185 913
NCBI-nt 385 115,237 73 871
NCBI-nr 261 - 110 958