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Table 7 Types and distribution of SSRs in flax BAC-End sequences

From: Physical mapping and BAC-end sequence analysis provide initial insights into the flax (Linum usitatissimum L.) genome

 

Number of repeats

Motif

4

5

6

7

8

9

10

11

12

13

14

15+

Total

Dinucleotide

             

AC/GT

-

-

35

13

13

1

-

1

-

-

-

1

64

CA/TG

-

-

39

25

12

2

3

-

-

-

-

-

81

GA/TC

-

-

92

47

35

25

13

16

7

4

2

15

256

AG/CT

-

-

102

68

51

39

23

16

13

7

6

28

353

TA

-

-

99

71

53

48

32

19

15

13

5

33

388

AT

-

-

112

78

41

34

35

27

21

15

10

56

429

Trinucleotide

             

ACG/CGT

-

7

1

-

-

-

-

-

-

-

-

-

8

CGA/TCG

-

5

6

2

-

-

-

-

-

-

-

-

13

CGC/GCG

-

12

2

-

1

-

-

-

-

-

-

-

15

GAC/GTC

-

9

4

3

-

-

-

-

-

-

-

-

16

GTA/TAC

-

6

5

3

2

1

-

-

-

-

-

-

17

GCC/GGC

-

15

2

2

-

-

-

-

-

-

-

-

19

CTA/TAG

-

9

9

2

-

-

-

-

-

-

-

-

20

CAC/GTG

-

19

2

-

-

-

-

-

-

-

-

-

21

ACT/AGT

-

7

12

6

1

-

1

-

-

-

-

-

27

CCG/CGG

-

23

6

3

1

-

-

-

-

-

-

-

33

ACA/TGT

-

19

8

1

6

1

-

-

2

-

-

-

37

CCA/TGG

-

26

11

3

-

2

1

-

-

-

-

-

43

AAC/GTT

-

35

6

3

1

-

1

-

-

-

-

-

46

ACC/GGT

-

26

18

5

-

-

-

-

-

-

-

-

49

AGG/CCT

-

35

12

7

-

-

-

-

-

-

1

-

55

GCA/TGC

-

45

6

5

4

-

-

-

-

1

-

-

61

CTC/GAG

-

41

6

10

4

1

-

-

-

-

-

-

62

CAA/TTG

-

31

20

3

4

-

3

1

1

-

-

-

63

CAG/CTG

-

36

13

8

6

1

2

1

-

2

-

-

69

AGC/GCT

-

50

17

2

2

-

1

-

-

-

-

-

72

ATG/CAT

-

48

22

8

2

3

1

-

-

-

-

-

84

TAA/TTA

-

32

25

12

16

2

2

-

2

2

-

1

94

GGA/TCC

-

56

27

9

5

-

2

-

-

-

-

-

99

TCA/TGA

-

50

32

14

5

-

1

1

-

-

-

-

103

ATA/TAT

-

51

14

9

10

6

6

5

4

1

-

2

108

AAT/ATT

-

56

22

19

11

5

6

-

4

2

1

-

126

ATC/GAT

-

67

37

13

5

5

-

-

-

-

-

-

127

AAG/CTT

-

80

46

27

11

4

5

6

2

-

-

4

185

AGA/TCT

-

96

51

20

16

8

4

5

2

1

-

3

206

GAA/TTC

-

162

63

31

21

11

5

8

2

1

-

2

306

Tetranucleotide

-

118

36

12

5

3

7

-

-

-

-

-

181

Other higher order motifs

71

45

4

7

-

1

-

-

-

-

-

-

128

Total

71

1317

1024

551

344

203

154

106

75

49

25

145

4064

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BMC Genomics

ISSN: 1471-2164

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