Probing genomic diversity and evolution of Streptococcus suis serotype 2 by NimbleGen tiling arrays

BMC Genomics

Table 2 Polymorphisms in the regions of differences (RDs) in the tested SS2 strains

RD	Genome position		Direct Repeat	GC content*	Absence in strains	Gene	Annotation
	Start	End
RD1	93902	99882	99 bp	34.64%	607	SSU05_0100	unknown protein
					S735	SSU05_0101	unknown protein
					SS2-N	SSU05_0102	hypothetical protein
					T15	SSU05_0103	hypothetical protein
						SSU05_0104	unknown protein
						SSU05_0105	hypothetical protein
						SSU05_0106	hypothetical protein
						SSU05_0107	hypothetical protein
RD2	478619	481517	7 bp	42.64%	SS2-N	SSU05_0490	conserved hypothetical protein
						SSU05_0491	hydrolase (MutT family)
						SSU05_0492	ATP-binding subunit
RD3	834923	846186	15 bp	30.71%	05HAS68	SSU05_0862	site-specific recombinase
					ZF	SSU05_0863	hypothetical protein
					607	SSU05_0864	replication initiator protein
					S735	SSU05_0865	hypothetical protein
					SS2-N	SSU05_0866	hypothetical protein
					T15	SSU05_0867	hypothetical protein
						SSU05_0868	hypothetical protein
						SSU05_0869	hypothetical protein
						SSU05_0870	hypothetical protein
						SSU05_0871	hypothetical protein
						SSU05_0872	hypothetical cytosolic protein
RD4	1452704	1463847	19 bp	36.95%	05HAS68	SSU05_1513	site-specific recombinase
					1940	SSU05_1514	virulence-associated protein E
					ZF	SSU05_1515	hypothetical protein
					607	SSU05_1516	hypothetical protein
					SS2-N	SSU05_1517	hypothetical protein
					S735	SSU05_1518	hypothetical protein
						SSU05_1519	unknown protein
						SSU05_1520	unknown phage protein
						SSU05_1521	hypothetical protein
						SSU05_1522	hypothetical protein
						SSU05_1523	hypothetical protein
						SSU05_1524	hypothetical protein
						SSU05_1525	hypothetical protein
						SSU05_1526	transcriptional regulator
						SSU05_1527	transcriptional regulator
						SSU05_1528	Gp21 protein
						SSU05_1529	integrase
						SSU05_1530	integrase

ISSN: 1471-2164