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Table 1 Properties of the different libraries; abbreviations are as follows: COT cotyledons, E etiolated leaves, L light treated etiolated leaves, EPI epicotyl, LVN.1-5 leaf libraries 1-5, FLO flower, HYP hypocotyl, LVR.1 leaf library, non normalized; asequenced with GS flex, bsequenced with GS 20; all libraries were normalized except LVR.1;

From: Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing

library number of raw reads number of reads after crossmatch clean up number of reads after MIRA number reads for the assembly number of reads with AGI mapping raw nts nts after crossmatch mean readlength raw mean read length after crossmatch
COTa 343,694 335,050 272,731 272402 220,875 81,050,491 75,679,454 235 225
Ea 144,290 135,906 120,202 120126 101,119 34,849,428 32,229,999 241 237
La 192,117 174,563 157,977 157921 137,359 46,654,732 41,408,162 242 237
EPIa 243,294 233,143 189,093 188193 148,059 54,072,084 50,193,810 222 215
LVN.5a 320,209 311,538 268,315 267966 223,735 77,473,643 72,627,353 241 233
sum/averagea      294,100,378 272,138,778 236 228
LVN.1b 350,016 343,361 278,080 277888 228,894 36,551,286 33,767,205 104 98
LVN.2b 302,341 295,416 234,029 233790 192,903 31,399,731 29,009,144 103 98
LVN.3b 146,504 142,862 115,832 115751 96,087 15,049,571 13,963,252 102 97
LVN.4b 278,936 272,367 223,939 223596 184,175 28,590,490 26,562,093 102 97
FLOb 162,353 153,765 95,229 95097 70,957 17,047,889 15,039,288 105 97
HYPb 349,976 327,769 255,437 255310 210,073 36,269,788 31,823,328 103 97
sum/averageb      164,908,755 150,164,310 103 97
LVR.1b 308,042 293,201 191,394 191205 167,551 27,779,787 24,062,060 90 82
total 3,141,772 3,018,941 2,402,258 2399245   486,788,920 446,365,148