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Table 3 Quantification of different sources contributing to redundancy between unigenes; unigenes where mapped against 14 cDNA reference sequences of P. sativum: orthologs of the ten most frequent AGIs (Table 2), five known single copy genes from P. sativum, and four genes encoding Mendelian traits; the original alignments can be viewed by loading additional files 4 and 5 into an alignment viewer such as tablet [45].

From: Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing

gene name

corresponding pea cDNA

length in bases

# reads mapped

identical positions

percentage

putative SNP positions

percentage

putative sequencing error positions

percentage

LHCb1

gi|56809378

801

56517

9

1.1

131

16.4

779

97.3

LHCb2

gi|56809380

798

15370

28

3.5

9

1.1

768

96.2

CCBP

gi|141448063

922

10616

609

66.1

18

2.0

296

32.1

Ran1

gi|123192430

666

6488

363

54.5

8

1.2

300

45.0

RuBP

gi|169152

674

651

182

27.0

68

10.1

475

70.5

ApxI

gi|169042

3625

32

1367

37.7

8

0.2

99

2.7

ek-oxidase

gi|37954113

1797

1474

1749

97.3

20

1.1

25

1.4

Fed-1

gi|169086

1995

35

1360

68.2

1

0.1

87

4.4

HMG1

gi|436423

807

6

670

83.0

5

0.6

124

15.4

plastocyanin

gi|20845

1505

107

1050

69.8

2

0.1

453

30.1

G3bh

gi|2316017

4248

3

3577

84.2

0

--

1

0.0

bHLH

gi|308084332

11892

0

0

--

nd

nd

nd

nd

SBEII

gi|510546

2919

14

2186

74.9

20

0.7

18

0.6

SGR

gi|156713218

792

1

787

99.4

4

0.5

1

0.1