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Table 2 Summary of genome wide associations for CHILLP8 and P8FAT under different kinds of trimming.

From: The effect of measurement error of phenotypes on genome wide association studies

Trait Type N
SNPA
FPRB Common
Sig
SNPsC
r D Top 5
ChrE
Sig
%F
Best
regionG
Gene(s)H
CHILLP8 GWAS 63 84% - - 14, 7, 8, 1, 6 42.9% BTA14:23 XKR4 to
PENK
including
PLAG1
P8FAT GWAS 71 76% 7 0.53 14, 9, 6, 8, 7 45.1% BTA14:25 NSMAF
& TOX
P8MEAN GWAS 59 92% 22/23I 0.84/0.88I 14, 8, 6, 3, 13 55.9% BTA14:23 & 25 XKR4 to
TOX
CHILLP8 trim10% 57 95% - - 14, 1, 11, 3, 22 38.6% BTA14:23 XKR4
to PENK
P8FAT trim10% 66 82% 0 0.38 14, 9, 29, 11, 10 47.0% BTA14:25 NSMAF
& TOX
CHILLP8 diff < 36 53 100% - - 14, 8, 3, 18, 13 45.2% BTA14:23
& 25
XKR4 to
TOX
P8FAT diff < 36 52 100% 10 0.75 14, 2, 3, 1, 8 42.3% BTA14:23
& 25
XKR4 to
TOX
CHILLP8 diff < 4 81 67% - - 14, 11, 1, 2, 7 48.1% BTA14:23
& 25
XKR4 to
TOX
P8FAT diff < 4 98 55% 49 0.92 14, 11, 15, 2, 6 45.0% BTA14:23
& 25
XKR4 to
TOX
  1. A Number SNP significant at P < 0.001
  2. B False positive rate
  3. C Number of significant (P < 0.001) SNP in common between a CHILLP8 and P8FAT GWAS of the same type
  4. D Correlation between allele effects of GWAS of CHILLP8 and P8FAT for the same method of data trimming
  5. E Top 5 chromosomes with largest number of SNP significant at P < 0.001 in descending order of number of significant SNP
  6. F Percent of SNP with P < 0.001 on the top 5 chromosomes compared to all chromosomes
  7. G Genomic region with the largest number of SNP significant at P < 0.001
  8. H Gene(s) located to this genomic region
  9. I P8MEAN and CHILLP8 or P8FAT respectively